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sample 1000
na12878 recessive
exome_4_els var annotated
exome_3_eds var annotated
4501349 filtered
stv2_auto_user_qd5-282-stv2_20170530_435_variantreport
a7kcg_miseq3_nih-1_s1
hc082_s4_l001_r_raw
pid616-variant_table
kuhno_1-10 ip_264_1.variant2
kuhno_1-10 ip_264_2.variant3
kuhno_1-10 none.variant
kuhno_1-10 up_218_1.variant
kuhno_1-10 up_218_2.variant
kuhno_1-10 up_218_3.variant
kuhno_1-10 up_218_4.variant
kuhno_1-10 up_218_5.variant
kuhno_1-10 up_218_6.variant
kuhno_1-10 up_218_8_variants_none.variant
nordenskjold_uwcmg_ah_1 hf final 171270
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Pesci_M_mother
nordenskjold_uwcmg_ah_1 hf final 171272
nordenskjold_uwcmg_ah_1 hf final 171796
3029
3030
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_C_prob
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father
5pct_s1-lof
5pct_s1-unified-snp-indle
dnl46897_jcv imported
1313946
tsvc_variants_ionxpress_001
tsvc_variants_ionxpress_002
we_ex1704620
exome_4_els var annotated
genome_ann_shippy_full_20150426064857
73411510240357_annotated
7341maas0357_annotated
genome_mike_maas_v4_full_20170611220637-output
genomapp23a_completereport_20170505
snpsforvep
genome_me_full_20160129125336
paciente_3751_26_mayo_17_26may2017_15_09_01_836
de2670_08232016_bwamem filtered haplotype snpindel
dnn62 snp
dxc01 snp
lfl38 snp
msp09 snp
sp16_multisample SP16_819
sp16_multisample SP16_820
sp16_multisample SP16_961
sp16_819
sp16_961
sp16_820
ba exome
sample_cs2-dmso_recalibrated_variants_snps_only_hard_filtered_snps_only
sample_cs2-enzar_recalibrated_variants_snps_only_hard_filtered_snps_only
trf_44289
8754_onol_s2_vs_onol_n_ucla TUMOR
8754_onol_s2_vs_onol_n_ucla NORMAL
1-p159 final
gird-c1a filtered variants
na12878 dominant
goku_snps_indels
concordancevcf_d5_20161214 GATK-HC_D5
concordancevcf_d5_20161214 Mpileup_D5
concordancevcf_d5_20161214 Pindel_D5
concordancevcf_d5_20161214 FreeBayes_D5
concordancevcf_d5_20161214 VarScan_D5
nk_full_variant_table
kk_full_variant_table
ek_full_variant_table
ldp546
sample 1000
valid-000001933_mtdepth-216 smcounter cut
lb9428 final
vcfbeta-gs000035329-asm
0010dbs 0_bwamem sort rmdup readfiltered realn recal 0_gatk_hc
10 1016j ogc 2015 10
muestra3_s1
muestra2_s1
muestra1_s1
carsonmiller_e4113_h150317_7_mutation_report1-ngs408 10
filter output step4
ngs049p_s3
panvjj_normal_tumor strelka indels gatk annotated NORMAL
panvjj_normal_tumor strelka indels gatk annotated TUMOR
exome_all
54144-mm-ensemble
17nr2143
i26272829p2 hg19_multiannofinal-pacientes-f8765-1-e-f9759-1
manuela_niro
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc247
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc246
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc248
genome_patricia_tachinardi_andrade_silva_v4_full_20170430162109
oje115-001 vqsr all
genome_simone_niciura_v4_full_20170629062030
dipg0076_interval TUMOR
dipg0076_interval NORMAL
gg_mutation_report
ee
grc14378020_exome
grc14378018_exome
grc14378021_exome
grc14378019_exome
grc14378022_exome
family15 variants v3
i29p2-c-18094-iii
h1esc_mtesr1 samtools indel
test
v2649_v1_non-filtered_2017-07-24_10_39_21
v2649_v1_non-filtered_2017-07-24_10_39_21
62393865_s40 mvar 62393865_S40.FREEBAYES
62393865_s40 mvar 62393865_S40.GATK
62393865_s40 mvar 62393865_S40.SAMTOOLS
cmi
ppox
ppox
nextera4_03 03 2017_brca_13_s13_v5
hg001_grch37_giab_highconf_cg-illfb-illgatkhc-ion-10x-solid_chrom1-x_v 3 3 2_highconf_pgandrtgphasetransfer
tsc_27 01 2017_8_s8_v7
tsc_27 01 2017_8_s8_v7
cmt4
larissa_s11
myexome-1
c002_attactcg-tatagcct srt mkdups flt
c003_attactcg-atagaggc srt mkdups flt
c005_attactcg-cctatcct srt mkdups flt
final-ma145
mpe115_v1112
pep_0060
gordonsepilepsy filtered 2076
gordonsepilepsy filtered 2077
gordonsepilepsy filtered 2484
gordonsepilepsy filtered 2486
gordonsepilepsy filtered 2487_pool
gordonsepilepsy normalized 2076
gordonsepilepsy normalized 2077
gordonsepilepsy normalized 2484
gordonsepilepsy normalized 2486
gordonsepilepsy normalized 2487_pool
outputvcforig-sve05k
12ac02301-1_s1 genome
13ac00301-2_s1 genome
15ac02301_s1 genome
15ac02302_s1 genome
15ac02302_s1 genome
15ac02303_s1 genome
2-ac-cap17_s1 genome
15ac02301_s1 genome
15ac02303_s1 genome
15ac02303_s1 genome
16hpc01701_s1 genome
16hpc01702_s1 genome
16hpc01703_s1 genome
15a02301_s1 genome
09pla02101_s1 genome
zehra_acar_variant_analysis_report-2
genome_adam_cuomo_v4_full_20170809151438
sl85 samtools snp
gpp10314_20120828021333_nucseek
gpp10315_20120828021333_nucseek
genome_none_none_v4_full_20170814115900 Aug
genome_none_none_v4_full_20170814115900 14
genome_none_none_v4_full_20170814115900 11:59:00
genome_none_none_v4_full_20170814115900 2017
variant_list
l-322-filtered-snps-indels
16on271_ionxpress_012
eb408_unique
eb409_unique
myexome-1 annotated mendelmd
myexome-1 annotated mendelmd
idash_ishimaki
idp34_annotado
combined sample_100.variant
combined sample_38.variant2
combined sample_39.variant3
combined sample_40.variant4
combined sample_41.variant5
combined sample_42.variant6
combined sample_43.variant7
combined sample_44.variant8
combined sample_45.variant9
combined sample_46.variant10
combined sample_47.variant11
combined sample_48.variant12
combined sample_49.variant13
combined sample_50.variant14
combined sample_51.variant15
combined sample_53.variant16
combined sample_54.variant17
combined sample_55.variant18
combined sample_56.variant19
combined sample_57.variant20
combined sample_59.variant21
combined sample_60.variant22
combined sample_61.variant23
combined sample_62.variant24
combined sample_63.variant25
combined sample_64.variant26
combined sample_66.variant27
combined sample_67.variant28
combined sample_68.variant29
combined sample_69.variant30
combined sample_70.variant31
combined sample_71.variant32
combined sample_72.variant33
combined sample_73.variant34
combined sample_74.variant35
combined sample_91.variant36
combined sample_92.variant37
combined sample_93.variant38
combined sample_94.variant39
combined sample_95.variant40
combined sample_96.variant41
combined sample_97.variant42
combined sample_98.variant43
combined sample_99.variant44
mt2379_s1
fyc5
dna-data-2017-08-27
isabela
g104-1_bowtie2_dupremoved_realigned_v0 1 19mpileup_dummy
anemia
a_kheyri final
pytbv dbsnpa
1445140
46651510241455_annotated
mm170802ap
an035_hg19
allfamilies AWI
allfamilies AWJ
allfamilies AWK
allfamilies AWL
allfamilies AWM
allfamilies BIR
allfamilies BQ0
allfamilies BIP
allfamilies BIQ
fam3 AWI
fam3 AWJ
fam3 AWK
n498_snp_indel_anno
sample13_s1_s1_001_filtered_dp10_splitted
sample14_s2_s2_001_filtered_dp10_splitted
sample15_s3_s3_001_filtered_dp10_splitted
p0085_filtered
variants
refseq_hg38_cds merged symbol igv-capture hist coverage
chu17257-cha-zoe_s2
full_genome
15071143293692125889425
1507114365681-1642853908
genome_tim_dotson_v5_full_20171008065907
genesmarker
mitovcf_file
snps raw-snps 17_0233
snps raw-snps 17_0234
snps raw-snps 17_0235
62408779_s7 mvar 62408779_S7.FREEBAYES
62408779_s7 mvar
62408779_s7 mvar 62408779_S7.GATK
62408779_s7 mvar 62408779_S7.SAMTOOLS
genome_christian_muller_v3_full_20161102032233
genome_christian_muller_v3_full_20161102032233
genome_christian_muller_v3_full_20171011070154 Oct
genome_christian_muller_v3_full_20171011070154 11
genome_christian_muller_v3_full_20171011070154 07:01:54
genome_christian_muller_v3_full_20171011070154 2017
ashksample HG002
ashksample HG003
ashksample HG004
mpileup-final_calls_32716
ioncode_0105_fn25 bam-25 IonCode_0105_FN25.bam
ioncode_0105_fn25 bam-25 [25]
ioncode_0105_fn25 bam-25 (single)
ioncode_0105_fn25 bam-25 (Reads,
ioncode_0105_fn25 bam-25 Locally
ioncode_0105_fn25 bam-25 Realigned,
ioncode_0105_fn25 bam-25 Variants,
ioncode_0105_fn25 bam-25 EXON,
ioncode_0105_fn25 bam-25 AAC,
ioncode_0105_fn25 bam-25 AIFOG)
17-11096s1 germline-multisample gatk annotated 17-11096s1
17-11096s1 germline-multisample gatk annotated 17-11097s2
17-11096s1 germline-multisample gatk annotated 17-11098s1
17-11096s1 germline-multisample gatk annotated 17-11099s1
dossier4-di450-2-b00h4r3_hg19_snp annot
r_2016_06_15_14_03_10_user_mx-267-exomess_pool37_5b552 570 872
5500xl_23312002_2013_06_25_exomas16_2h495 processed recal
5500xl_23312002_2013_06_25_exomas16_2h496 processed recal
ca
snps raw-variants selected
snps raw
71161510240931_annotated-4
fakhrieh_salemi gatk snp
fakhrieh_salemi gatk snp
index31
fakhrieh_salemi gatk indel
filter output step3
chh6738_annovar
82937_v1
5840_s17
5516_s23
75_filt_10x
15001702300578a snp-1
qw2315_combined_r1 fastq raw
62388010_s7 mvar 62388010_S7.FREEBAYES
62388010_s7 mvar 62388010_S7.GATK
62388010_s7 mvar 62388010_S7.SAMTOOLS
eb1954_unique
f1 H02H9ALXX_1_F01_K0512P_Human_NoIndex_2-25348_Spuler_Lab_R1
f1 (paired)
f1 trimmed
f1 (paired)
f1 (Reads)
f1 -
f1 locally
f1 realigned
f1 (Variants,
f1 AAC)
allllllllllllyblswd
pdb336 vep
pdb346 vep
327_c879tanxx_gatagaca_l005 bam filtered vep Protein_position
327_c879tanxx_gatagaca_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Codons
327_c879tanxx_gatagaca_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Extra
339_c879tanxx_aaggacac_l005 bam filtered vep Protein_position
327_c879tanxx_gatagaca_l005 bam filtered vep Protein_position
pg_merged_chr19 recode PG1
339_c879tanxx_aaggacac_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Codons
339_c879tanxx_aaggacac_l005 bam filtered vep Codons
339_c879tanxx_aaggacac_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Extra
339_c879tanxx_aaggacac_l005 bam filtered vep Extra
pg_merged_chr19 recode PG2
pg_merged_chr19 recode PG3
pg_merged_chr19 recode PG4
tz1
tz1
wes_0001 hg19 bwa gatk freebayes combined
fam5 cleaned 3403_16
fam5 cleaned 3404_16
fam5 cleaned 3405_16
fam5 cleaned 3422_16
variants default
variants default
variants default
variants default
cds 3403_16
cds 3404_16
cds 3405_16
cds 3422_16
snps raw-variants selected 3403_16
snps raw-variants selected 3404_16
snps raw-variants selected 3405_16
snps raw-variants selected 3422_16
tsvc_variants_ionxpress_032
24_genetics_snv_99 8 slt
b12
1528098
damold_variant
damold_variant
tumor_sample brca
t30541_annotated_calls
t30541_annotated_calls
tumor_sample brca
nipe_alignment snps
halo_cad_march_17
halo_cad_march_17
mm170835gc
mm171122md
261_emreatak_v1_non-filtered_2016-09-01_06_25_23
upload2ensembl
snps raw MG15-000
snps raw MG15-001
snps raw MG15-002
snps raw SHA-06-33146
watson
sg5_onco_2_s2_v13
rawdata23andme
fam001 NG171210431
fam001 NG171210432
fam001 NG171210433
tsc_7_5_s5_v13
5_s5
5_s5 genome
trio_parsed_vcf15_03359procol_vcf_report overall_15_03359procol_R1_converted_Unique_Output.pjt
trio_parsed_vcf15_03359procol_vcf_report 15_06810matcol
trio_parsed_vcf15_03359procol_vcf_report 15_06811patcol
na12878 recessive
ex-15004
fpd-aix-mes-312-12
fpd-alg-mad-1230-3
jg31048rm_filtered-jrmeena-copy 117543
5517_sorted_hg19
example_snp
er-447_an6 ann hg38_multianno_umd
na12878 compound_heterozygous
552117_ngs_ex
552017_ngs_ex
552217_ngs_ex
annotation final
552217_ngs_ex annotated mendelmd
miller
abdullah_h_mahmood_ngs_032_17 ionxpress_011 r_2017_11_03_08_01_58_user_s5-0138-35-copy_of_ngs_032_17_aip_48_ornek_2
mm180101la
mm180104ea
mm180106mm
mm180110lp
mm180111m
mm180112f
1_s1 genome
1_s1
1_s1
2_s2
3_s3
4_s4
hboc12
10049_haplotypecaller_target
hgcat_input_example-3
child2_indexed
ptc-wgs combined vep gnomad
dels
d233
cpt10
33011510240923_annotated
amal-report-2
073_tsvc_variants
046_tsvc_variants
045_tsvc_variants
044_tsvc_variants
043_tsvc_variants
042_tsvc_variants
033_tsvc_variants
031_tsvc_variants
030_tsvc_variants
sm006-1 both
sm007-1 both
sm008-1 both
55001703319634a raw
01pjhc5_s1_l001_r0trimunpaired_cut_fastqc
01pex6c4_s1_indel_filter_end
mm180211ms
aml-1726_v1_non-filtered_2017-02-26_03_51_07
gt_so_4086_igt_1r
index13_otb1697_gerard goyette_500-049a_human_hex_av5-utr_50x_03232016 deduplicated realigned recalibrated snpeff snpsift
index9_otb1693_gerard goyette_500-049a_human_hex_av5-utr_50x_03232016 deduplicated realigned recalibrated snpeff snpsift
index34_otb3338_gerard goyette_500-049a-2_human_hex_av5-utr_50x_06112016 deduplicated realigned recalibrated snpeff snpsift
18063
21_s21
nist_integratedcalls_12datasets_130517_hethomvarpass_vqsrv2 15
21_s21 genome
gfg_filtered_unphased_genotypes_vcf
schinzel_giedion
432 varscan snp snpann
mng17-30918-p-lin003-patient-0001-e9504_mutation_report1
n2_s17
tsvc_variants_ionxpress_001
tsvc_variants_ionxpress_004
lanjinglingc2017103103501 mkdup sorted genotypegvcf
mmg003343
hodakb10_snp_indel_anno
hodakb12_snp_indel_anno
hodakt10_snp_indel_anno
hodakt12_snp_indel_anno
patient ann filtered
62334902_s25-161111_k00359_0038_bhg532bbxx-normal-illuwes-4f0ca40f-mvar
62334902_s25-161111_k00359_0038_bhg532bbxx-normal-illuwes-4f0ca40f-mvar
mp91583 both
ancestrydna
el-exome_s1
tsvc_variants_ionxpress_001-5225
9040 snpeff high
9040 cleaned_snpindel
9040 snpeff moderate
ex_013_mod
94533-0209701724_ms_onbait
promethease-1
71161510240931_annotated-4
hsp116-ii-1-filtered_variants
annovar hg19_multianno_pass
miller snpeff
s308
s315_9
248419675_annotated
test
variants
tsvc_variants_ionxpress_002-4
tsvc_variants_ionxpress_002-4
annotation final
ex
ex-sf
tsvc_variants_ionxpress_040
ap253-3 final
aaa
acacia
filtered
scz009_trimmed samtools
dnl109758_dez imputed
output 09_chr1 fa filtered3
45655-cr-ensemble
galaxy103-varscan_on_data_102
test
m1_rms1_10
m1_rms1_1
m1_rms1_11
m1_rms1_12
m1_rms1_14
m1_rms1_15
m1_rms1_13
m1_rms1_16
m1_rms1_17
m1_rms1_18
m1_rms1_19
m1_rms1_3
m1_rms1_2
m1_rms1_5
m1_rms1_4
m1_rms1_6
m1_rms1_7
m1_rms1_8
m1_rms1_9
mm180725at
mm180706dm
img-20181008-wa0006
tcga-bf-a1pu-01a-11d-a19a-08
pbrpl18h2_-_sravanthi_filtered_2018-09-27_04_08_32
breast1 1
sample1
mo-mi-abdi1130 final
u697_bwa_picard
164649418_s1 ann select dbsnp
na12877-rep1_s1
na12877-rep1_s1
f txt
f
2-fl-ha_482-01
miller
ctr0100487_mex076_alain_mancinas_201814015100_pass
bra19324freebayes
traning-sample-vcf-file
lapatrada pol indel
22603_s43
22603_s55
ns1-6
ns1-5 final
ns2-5 filtered variants
ns2-10 final
ns4-4
ns4-5
ns4-6
sama-karam_s1
copy-of-pof-ii-1-filtered-snps-indels-query output genome_summary
hsp108-ii-1-filtered_variants
2636_s28
2761_s29
4450_s11
6306_s1
6343_s27
6422_s23
6424_s25
6426_s21
12016_s26
12030_s5
12061_s9
12066_s20
12067_s13
12068_s19
12078_s17
12083_s14
12086_s22
12092_s33
12107_s6
16420_s8
16431_s7
16441_s18
17503_s31
17507_s32
2632_s12
sy-51_s2
sy-52_s3
2632_s12
2632_s12
jp5186_chip
32
na12878 dominant
miller
filtered_merged_a00k
rm-274 final
pm-286 final
diu946-001_results_diu946-001 final
shr
genome_jeffrey_bloom_v5_full_20190110052330
genome_jeffrey_bloom_v5_full_20190110052330
ht12d final
gatk f008 reheader
father
sec-2-18-7_filtered
sample_file
wanguard_s1
cdh6-52
full_combined_excel
miller
my var-final
62455815_s29 mvar
tsvc_variants_ionxpress_002
59876-as-ensemble
59876-as-ensemble
rf3717
56001801068581a snp
56001801066395a snp
56001801066395a indel
fmsd_filtered_snp_indel
180919fr-013-1
tsvc_variants_ioncode_0249
37-g0191 raw_variants
mr
mr
wes 6160 filtered recode
1886106_bak chr20
genome_susan_abernathy_v4_full_20190218171918
drift-nimh_freeze2_brmenn
9etks0122_annotation
17on508_ioncode_0113
a-full_variant_table
gm12878
hd829_190221_nb551050_0207_ahvwygbgx9 germline
solo_-a-star-wars-story-trailer
ctr0100514_mex083_jonathan_resendiz_20190502090400_pass
ctr0100502_mex079_amisaday_mora_20190330015800
200567_mutation_report1_filtered
qmul_trio_lof_assignment_2019
sample_hardfiltered
trio2 snpeff canon annotated exons dhg21091-v
trio2 snpeff canon annotated exons dhg21610-v
trio2 snpeff canon annotated exons dhg21611-v
8wkyncwo
8wkyncwo
mm160117hb v200
skaz004 gatk snp
porto_final_annot intervar_annovar
53586-full_variant_table
53586-full_variant_table
dna-data-2019-03-03
60820188484921_wgz snp-4
gi-variants-passed-homoz
wes_0012 hg38
rcl1126
wt108005 snp
wt108005fu0 snp
wt108005mu0 snp
mm190528hvp
mm190623opd
myexome
54871510242650_annotated-2
aghdas_dehghani qualified
plink
filtered4
filtered2
filtered5
filtered6
mpileup-final_calls_arg_046
111
p001_fim
xah
2_s2
kemikp79
h8m mutect2
001 final
60820188472738 snp
allsamples as snp_indel_pass_annotated
h7 indel_final
h11 snp_final
ashwath_ramji_slb567__wes_annotated_vcf
60820188484090 snp
56001808052608_wgz sv
f70
mr50 2
60820188481224 snp
60820188481224 indel1
yushu_s1 hg19_multianno
lh-2005601_umi hg19_multianno
pcg-f60 allchr snpeff p sal sal10_1 clinvar candidate_genes_tagged
genom_v5_full_20190304173844
144336383-full
144336383-full
moss final
62421900_s18-180124_k00541_0065_bhnjl7bbxx-normal-illuwesagi-76f236ce-freb filt pass
mmcs-209a
trio 2010_06 ychr sites-v2
trio 2010_06 ychr sites-v2
trio 2010_06 ychr sites-v2
file
tsvc_variants_ionxpress_006
f204-1528-proband
f204-1533-proband2
f204-1533-proband2
f204-1533-proband2
cp00040635 filtered indel
cp00040635 filtered snp
s216 g
6-na1287 both
00126 vep
demo1
60820188477917 filtered snp
f000043987_dp5_tag
2019_09_14t01_36_55z_suma_ionxpress_003
azm002
19508-01-01_s2
mm005
bm011
193810-bpl33-fg3374-sal-pi-19-16-4228-rhamppcr2_s123_l001_q20l30_sorted_primtv_snps
dg001 final
83356 33710_s2 smcounter anno
07-ms_s7 filtered vt snps indels annotated hg19_multianno
08-dh_s8 filtered vt snps indels annotated hg19_multianno
09-gf_s9 filtered vt snps indels annotated hg19_multianno
06t10508_snvintersect
95t14234_snvintersect
hht25
60820188482844 cnv
galaxy4-vcfselectsamples__on_data_1
62644690_s62 hpcl fboth pass
62644690_s62 bcfc filt pass
drift-nimh snps indels vqsr qced
62644690_s62 hpcl fboth pass
62644690_s62 bcfc filt pass
chan_pitt final
leila somatic
43_s43
44_s44
30_s30
nunez_a-2
variants selected
variants selected
liw
liw
nba852-001 variants
selected variants chr6
selected variants chr6
1351s
1352s
1353s
genome_aaron_hill_v3_full_20191101162607
skeletal
vqsr_snp_indel hc recaled
out
fomiga
94310feb
94410feb
718
chnaka
udp2568_axeq_1_hs37d5_remdup-uniqmap
udp5436_axeq_1_hs37d5_remdup-uniqmap
udp2569_axeq_1_hs37d5_remdup-uniqmap
udp2570_axeq_1_hs37d5_remdup-uniqmap
udp5435_axeq_1_hs37d5_remdup-uniqmap
udp2568_axeq_1_hs37d5_remdup-uniqmap
udp5436_axeq_1_hs37d5_remdup-uniqmap
udp2569_axeq_1_hs37d5_remdup-uniqmap
udp2570_axeq_1_hs37d5_remdup-uniqmap
sleepdisorders_saxena_sleep_exome_
funcotator_output
pjgl final
s75952_filtered_snps_and_indels
s75952_filtered_snps_and_indels
gen_coords_2546da25
gen_coords_4297ccf5
gen_coords_e4ad64d7
gen_coords_2546da25
gen_coords_2a24f493
20191018_null_jozsefpocsai_1_vcf
alves-daniel
ibg-2-cgm-0130 final
20041952_fiebersyndrome
axiomgt1 calls
136
914
914
dk31-akp-run025
wes413_annotated hg19_multianno
20159-01-01_s13-kopie
20160-01-01_s14-kopie
20160-02-01_s15-kopie
20161-01-01_s16-kopie
20162-01-01_s17-kopie
20163-01-01_s18-kopie
20165-01-01_s19-kopie
20166-01-01_s20-kopie
20167-01-01_s21-kopie
20168-01-01_s22-kopie
sano-converted-xao3oovlc7fnhcwi
60820188481023_wgz sv
nb26r3b7-vcf
nb26r3b7
nb26r3b7-vcf
ca-full_variant_table
df-full_variant_table
il-full_variant_table
le-full_variant_table
p767-full_variant_table
pa883-full_variant_table
p545-full_variant_table
p38bis-full_variant_table
2-pd
15_s15
17_s17
18_s18
mm200519jpm
mm200520lff
002-64854-300-scex
vep
haplotypecaller normalized sort
60820188477428 filtered snp
metin-yusa-ezelsoy
tsonexp104
na12878 recessive
f06400088-ib-ex-60-1639-mahdi-papolzaee-x_s46 soft_filtered
1jzxjfqlmt6b6sjn
sg8_171109_m03874_0051_000000000-bc4b6_osteo_7_s7_v13
2388
2388_2
mm200704jip pass
mm200801fps
mm200802avc
mm200803lca
pa_1_filt_10x
pa_2_filt_10x
pa_2_filt_10x
pa_3_filt_10x
pa_4_filt_10x
tsvc_variants_ionxpress_032
tsvc_variants_ionxpress_029
tsvc_variants_ionxpress_028
tsvc_variants_ionxpress_027
christinas-dna-raw-data
christinas-dna-raw-data
f06400419-ib-ex-34-1651-narges-nikzad-x-7d5-orion-ilya-1_s17 soft_filtered-1
257_mg_v1
ancestrydna
h06400150-ib-ex-60-1801-aliasghar-faghan-tonaj-x soft_filtered
g06400841-ib-ex-60-1790-lia-amanlo-x_s18 soft_filtered
h06400082-ib-ex-60-1795_s23 soft_filtered
g06400842-ib-ex-60-1791_s19 soft_filtered
h06400150-ib-ex-60-1801-aliasghar-faghan-tonaj-x soft_filtered
rbna2s annoted
mm200818ekc pass
60820188476706_wgz snp
60820188477428 filtered snp
60820188477428 filtered indel
mt9975_s20b_raw_onlyvariants
nb4y474q
chr1_tb
chrx_tb
f06400088-ib-ex-60-1639-mahdi-papolzaee-x_s46 soft_filtered
62716307_s105-200325_a00853_0090_bhnncndmxx-normal-illuwestwist-c50063e5-mvar
56001801068832b_wgz indel
56001801068832b_wgz snp
i06400152-ib-ex-60-1844-ehsan-ilya-biotech-orion-raw-data-9-ilya-biotech-4_s237 soft_filtered
data_trios
child filtered_variants
father filtered_variants
mother filtered_variants
raha-nazari
i06401043-ib-ex-60-1962-parsa-riazi-ilya-biotech-100x-7d5-4_s155 soft_filtered
2039528
cypcyp_20170119
lf7070
4k20002_01 gatk
myheritage_raw_dna_data
inbound8305150685853676453
42171
42440
94231510241520_annotated
lscsousa-37862-convertido
db-142035-19648
62792253_s65 bcfc filt pass
li29247
dnl435773_hfn
mm2
genome_benjamin_beeler_v5_full_20201120080226
genome_benjamin_beeler_v5_full_20201120080226
mn1_1_dkdn200006670-1a_hhwwtdsxy_filt_10x
dnaroberta
vcf2
s2421nr2_snvs
2020-005022-full_variant_table
k06401019-ib-ex-60-2014-fateme-pour-orion-raw-data-ilya-biotech_s3 soft_filtered
1351s
1352s
1353s
1352s
1351s
dnl415328_mwu
premaidha_pandita
8_s8
casescomb_anno_nochr vep
controlcomb_anno_vep
013 final
013 final
a1 mutect somatic snv mm10_multianno
a2 mutect somatic snv mm10_multianno
a3 mutect somatic snv mm10_multianno
a4 mutect somatic snv mm10_multianno
a5 mutect somatic snv mm10_multianno
mm210202rsv
mm210206egs
mm210202rsv
example-4 1-bnd
55101705103716_annotated
15001711234580a snp
merged_pe_ann-1
galaxy43-snpeff_eff__on_data_37
60820188472777 cnv
xyk885-001
galaxy6-vcffilter__3022nr6
galaxy6-vcffilter_3022nr4
galaxy7-vcffilter_3022nr8
galaxy7-vcffilter__3022nr7
galaxy36-vcffilter__3466nr4
galaxy7-vcffilter__3466nr40
a
hocanf12689796 cnvnator filter reheader
schinzel_giedion
galaxy7-vcffilter__3466nr3
galaxy7-vcffilter__3466nr4
galaxy7-vcffilter__3466nr40
galaxy7-vcffilter__3466nr42
dados_brutos_saude
dna
20tes0779_fb
frasc37
15001711232689a snp
04-cn_s4
etb21-ktww
genome
wes08-paw final
10200154963-unkown-ib-ex-60-2156-amirreza-safavi-orion-raw-data-9d375-1_s67 soft_filtered
ng11yhb2uc
104001164731-unkownib-ex-60-2253ariyaeskandari-orion-rawdata-9d5-2_s86 soft_filtered
smallvariants filtered
m21 14_15b68a
file
dados_brutos_saude
galaxy8-vcffilter_3910nr1
c1-bcemep2073 snp indel excludeflt grch38
p1-bcemep2058 snp indel excludeflt grch38
c1-bcemep2073 snp indel excludeflt grch38
p1-bcemep2058 snp indel excludeflt grch38
ngs_variants
sample202111_ merge
fls_f1
fls_f1
abdelali_rgd43_1_s22_qualfilter2
89896
mm210618mmm
mm210618mmm
1_1-200000_1234n
62466786_s45 mvar
62466786_s45 mvar
filter output step1
468f2at-raw_hg19
dados_brutos_saude
snp_m4n4
ztc634-001 cnv grch38
ztc634-001 variants grch38
riya_final_variants
rajesh_father_final_variants
riya_sister_final_variants
sweety_das_mother_final_variants
hervkucsc final_compsc12
hervkucsc final_compsc13
hervkucsc final_compsc15
hervkucsc final_compsc16
hervkucsc final_compsc17
hervkucsc final_compsc18
hervkucsc final_compsc21
hervkucsc final_compsc22
hervkucsc final_compsc23
hervkucsc final_compsc24
hervkucsc final_compsc25
hervkucsc final_compsc26
hervkucsc final_compsc27
hervkucsc final_compsc28
hervkucsc final_compsc29
hervkucsc final_compsc30
hervkucsc final_compsc8
hervkucsc final_compsc10
hervkucsc final_compsc11
hervkucsc final_compsc9
hervkucsc final_compsc7
hervkucsc final_compsc2
hervkucsc final_compsc4
hervkucsc final_comp31
haplotypecaller_300_21
sl476778 qc recode
mm210921mll
vcffilter4321nr2
vcffilter4321nr1
c82258b6-cab8-419f-9847-26d3cb04de6c
gowrish_ghosh_7071491
lmivty4833qdq7qw
mk265 final
mk264 final
mk266 final
mk268 final
mk267 final
mm211102rsf
srr8898194
pai-convertido
genera-pai-dados-brutos
23andme
patient
lofreq1-annotation
meu-dna-convertido-v5
f83-1371_s1
f83-980_s1
f83-981_s1
test
test
15001710502500a snp
15001710502500a indel
tw-001-300447370701 hard-filtered
tw-001-300447370801 hard-filtered
tw-001-300447370901 hard-filtered
tw-001-300447371001 hard-filtered
pfeiffer-singleton
igb85_p_baserecal_precalread_varcall g
garrettgeminiuc-ng1kmmceb1-30x-wgs-sequencing_com-10-12-21 mito
eticket_ven014_12191851_1
wes018-ban final
wild final
15001711234580a snp
galaxy396-snpeff_eff__on_data_20_and_data_390
galaxy413-snpeff_eff__on_data_20_and_data_412
test
vars_mtec_s13
readme
153751
tm-001-300470609201_sample-4 hard-filtered
multisample final
all annotation 21
148225_eymennacar_93_final
sec5
galaxy13-vcffilter__on_data_11
myheritage_raw_dna_data
genome_kristen_hiser_v5_full_202204271056061
1ng1gd5leyg-1
output
output
documento-de-eunice
tm-001-300484487501-r1 hard-filtered
tm-001-300484487601 hard-filtered
ngs-5_s2
tw-001-300447371501 hard-filtered
tw-001-300458116301 hard-filtered-2
tm-001-300484487801 hard-filtered
mn1_1_dkdn200006670-1a_hhwwtdsxy_filt_10x
mn1_1_dkdn200006670-1a_hhwwtdsxy_filt_10x
bac931-001 variants grch38_
my_protein_filter_vep
drr006760 haplotypecaller
s65_cosmic_annovar hg38_multianno hg38_multianno
s96_cosmic_annovar hg38_multianno hg38_multianno
hsm03
paolo_maccallini_snp
paolo_maccallini_indel
tomkooy-ng1k4katmj-30x-wgs-sequencing_com-09-09-22 snp-indel genome
15001710502500a snp
na12878 compound_heterozygous
na12878 compound_heterozygous
na12878 compound_heterozygous
kemik154
2765 filtered indel
2765 filtered snp
rawdataoriginal
upj-1_annotation
gen1
63084816_s277 hpcl fboth pass
dados_brutos_423_saude
dados_brutos-fer_212_saude
liblalt53_variants funcotatedb37
ng1hpy2syw1
s_25_17 haplotypecaller filtered
damb121 variants
galaxy94-snpeff_eff__dt-sc1_filtered___100
test
test
variants_1132761_1003714
exome_tobias_qualls_7875dc_e9i96r
epf23-lugp final
mk266 final
mk265 final
mk264 final
mk268 final
mk267 final
freebayes-on-259-variants
br_2009 hard-filtered
88_1_4113063-4113122_fullgenome
88_1_4113063-4113122_fullgenome
sis-3299335378-52-a3-0222-full_variant_table
1-ng10uyr74p-30x-wgs-sequencing_com-01-16-24 snp-indel genome
leftfiltered
leftfiltered
wd_h final
lis_hg19 filt
62951226_s22 bcfc filt pass
62951226_s22 bcfc filt pass
63239608_s186 hpcl fboth pass_2
anotado
sample 1000
na12878 recessive
exome_4_els var annotated
exome_3_eds var annotated
4501349 filtered
stv2_auto_user_qd5-282-stv2_20170530_435_variantreport
a7kcg_miseq3_nih-1_s1
hc082_s4_l001_r_raw
pid616-variant_table
kuhno_1-10 ip_264_1.variant2
kuhno_1-10 ip_264_2.variant3
kuhno_1-10 none.variant
kuhno_1-10 up_218_1.variant
kuhno_1-10 up_218_2.variant
kuhno_1-10 up_218_3.variant
kuhno_1-10 up_218_4.variant
kuhno_1-10 up_218_5.variant
kuhno_1-10 up_218_6.variant
kuhno_1-10 up_218_8_variants_none.variant
nordenskjold_uwcmg_ah_1 hf final 171270
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Pesci_M_mother
nordenskjold_uwcmg_ah_1 hf final 171272
nordenskjold_uwcmg_ah_1 hf final 171796
3029
3030
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_C_prob
proie_c_prob_raw_snps_indels_hapcall_genotype_filtered_phased g Proie_L_father
5pct_s1-lof
5pct_s1-unified-snp-indle
dnl46897_jcv imported
1313946
tsvc_variants_ionxpress_001
tsvc_variants_ionxpress_002
we_ex1704620
exome_4_els var annotated
genome_ann_shippy_full_20150426064857
73411510240357_annotated
7341maas0357_annotated
genome_mike_maas_v4_full_20170611220637-output
genomapp23a_completereport_20170505
snpsforvep
genome_me_full_20160129125336
paciente_3751_26_mayo_17_26may2017_15_09_01_836
de2670_08232016_bwamem filtered haplotype snpindel
dnn62 snp
dxc01 snp
lfl38 snp
msp09 snp
sp16_multisample SP16_819
sp16_multisample SP16_820
sp16_multisample SP16_961
sp16_819
sp16_961
sp16_820
ba exome
sample_cs2-dmso_recalibrated_variants_snps_only_hard_filtered_snps_only
sample_cs2-enzar_recalibrated_variants_snps_only_hard_filtered_snps_only
trf_44289
8754_onol_s2_vs_onol_n_ucla TUMOR
8754_onol_s2_vs_onol_n_ucla NORMAL
1-p159 final
gird-c1a filtered variants
na12878 dominant
goku_snps_indels
concordancevcf_d5_20161214 GATK-HC_D5
concordancevcf_d5_20161214 Mpileup_D5
concordancevcf_d5_20161214 Pindel_D5
concordancevcf_d5_20161214 FreeBayes_D5
concordancevcf_d5_20161214 VarScan_D5
nk_full_variant_table
kk_full_variant_table
ek_full_variant_table
ldp546
sample 1000
valid-000001933_mtdepth-216 smcounter cut
lb9428 final
vcfbeta-gs000035329-asm
0010dbs 0_bwamem sort rmdup readfiltered realn recal 0_gatk_hc
10 1016j ogc 2015 10
muestra3_s1
muestra2_s1
muestra1_s1
carsonmiller_e4113_h150317_7_mutation_report1-ngs408 10
filter output step4
ngs049p_s3
panvjj_normal_tumor strelka indels gatk annotated NORMAL
panvjj_normal_tumor strelka indels gatk annotated TUMOR
exome_all
54144-mm-ensemble
17nr2143
i26272829p2 hg19_multiannofinal-pacientes-f8765-1-e-f9759-1
manuela_niro
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc247
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc246
galaxy208-vcfcombine__on_data_201_data_200_and_data_199-1 14cc248
genome_patricia_tachinardi_andrade_silva_v4_full_20170430162109
oje115-001 vqsr all
genome_simone_niciura_v4_full_20170629062030
dipg0076_interval TUMOR
dipg0076_interval NORMAL
gg_mutation_report
ee
grc14378020_exome
grc14378018_exome
grc14378021_exome
grc14378019_exome
grc14378022_exome
family15 variants v3
i29p2-c-18094-iii
h1esc_mtesr1 samtools indel
test
v2649_v1_non-filtered_2017-07-24_10_39_21
v2649_v1_non-filtered_2017-07-24_10_39_21
62393865_s40 mvar 62393865_S40.FREEBAYES
62393865_s40 mvar 62393865_S40.GATK
62393865_s40 mvar 62393865_S40.SAMTOOLS
cmi
ppox
ppox
nextera4_03 03 2017_brca_13_s13_v5
hg001_grch37_giab_highconf_cg-illfb-illgatkhc-ion-10x-solid_chrom1-x_v 3 3 2_highconf_pgandrtgphasetransfer
tsc_27 01 2017_8_s8_v7
tsc_27 01 2017_8_s8_v7
cmt4
larissa_s11
myexome-1
c002_attactcg-tatagcct srt mkdups flt
c003_attactcg-atagaggc srt mkdups flt
c005_attactcg-cctatcct srt mkdups flt
final-ma145
mpe115_v1112
pep_0060
gordonsepilepsy filtered 2076
gordonsepilepsy filtered 2077
gordonsepilepsy filtered 2484
gordonsepilepsy filtered 2486
gordonsepilepsy filtered 2487_pool
gordonsepilepsy normalized 2076
gordonsepilepsy normalized 2077
gordonsepilepsy normalized 2484
gordonsepilepsy normalized 2486
gordonsepilepsy normalized 2487_pool
outputvcforig-sve05k
12ac02301-1_s1 genome
13ac00301-2_s1 genome
15ac02301_s1 genome
15ac02302_s1 genome
15ac02302_s1 genome
15ac02303_s1 genome
2-ac-cap17_s1 genome
15ac02301_s1 genome
15ac02303_s1 genome
15ac02303_s1 genome
16hpc01701_s1 genome
16hpc01702_s1 genome
16hpc01703_s1 genome
15a02301_s1 genome
09pla02101_s1 genome
zehra_acar_variant_analysis_report-2
genome_adam_cuomo_v4_full_20170809151438
sl85 samtools snp
gpp10314_20120828021333_nucseek
gpp10315_20120828021333_nucseek
genome_none_none_v4_full_20170814115900 Aug
genome_none_none_v4_full_20170814115900 14
genome_none_none_v4_full_20170814115900 11:59:00
genome_none_none_v4_full_20170814115900 2017
variant_list
l-322-filtered-snps-indels
16on271_ionxpress_012
eb408_unique
eb409_unique
myexome-1 annotated mendelmd
myexome-1 annotated mendelmd
idash_ishimaki
idp34_annotado
combined sample_100.variant
combined sample_38.variant2
combined sample_39.variant3
combined sample_40.variant4
combined sample_41.variant5
combined sample_42.variant6
combined sample_43.variant7
combined sample_44.variant8
combined sample_45.variant9
combined sample_46.variant10
combined sample_47.variant11
combined sample_48.variant12
combined sample_49.variant13
combined sample_50.variant14
combined sample_51.variant15
combined sample_53.variant16
combined sample_54.variant17
combined sample_55.variant18
combined sample_56.variant19
combined sample_57.variant20
combined sample_59.variant21
combined sample_60.variant22
combined sample_61.variant23
combined sample_62.variant24
combined sample_63.variant25
combined sample_64.variant26
combined sample_66.variant27
combined sample_67.variant28
combined sample_68.variant29
combined sample_69.variant30
combined sample_70.variant31
combined sample_71.variant32
combined sample_72.variant33
combined sample_73.variant34
combined sample_74.variant35
combined sample_91.variant36
combined sample_92.variant37
combined sample_93.variant38
combined sample_94.variant39
combined sample_95.variant40
combined sample_96.variant41
combined sample_97.variant42
combined sample_98.variant43
combined sample_99.variant44
mt2379_s1
fyc5
dna-data-2017-08-27
isabela
g104-1_bowtie2_dupremoved_realigned_v0 1 19mpileup_dummy
anemia
a_kheyri final
pytbv dbsnpa
1445140
46651510241455_annotated
mm170802ap
an035_hg19
allfamilies AWI
allfamilies AWJ
allfamilies AWK
allfamilies AWL
allfamilies AWM
allfamilies BIR
allfamilies BQ0
allfamilies BIP
allfamilies BIQ
fam3 AWI
fam3 AWJ
fam3 AWK
n498_snp_indel_anno
sample13_s1_s1_001_filtered_dp10_splitted
sample14_s2_s2_001_filtered_dp10_splitted
sample15_s3_s3_001_filtered_dp10_splitted
p0085_filtered
variants
refseq_hg38_cds merged symbol igv-capture hist coverage
chu17257-cha-zoe_s2
full_genome
15071143293692125889425
1507114365681-1642853908
genome_tim_dotson_v5_full_20171008065907
genesmarker
mitovcf_file
snps raw-snps 17_0233
snps raw-snps 17_0234
snps raw-snps 17_0235
62408779_s7 mvar 62408779_S7.FREEBAYES
62408779_s7 mvar
62408779_s7 mvar 62408779_S7.GATK
62408779_s7 mvar 62408779_S7.SAMTOOLS
genome_christian_muller_v3_full_20161102032233
genome_christian_muller_v3_full_20161102032233
genome_christian_muller_v3_full_20171011070154 Oct
genome_christian_muller_v3_full_20171011070154 11
genome_christian_muller_v3_full_20171011070154 07:01:54
genome_christian_muller_v3_full_20171011070154 2017
ashksample HG002
ashksample HG003
ashksample HG004
mpileup-final_calls_32716
ioncode_0105_fn25 bam-25 IonCode_0105_FN25.bam
ioncode_0105_fn25 bam-25 [25]
ioncode_0105_fn25 bam-25 (single)
ioncode_0105_fn25 bam-25 (Reads,
ioncode_0105_fn25 bam-25 Locally
ioncode_0105_fn25 bam-25 Realigned,
ioncode_0105_fn25 bam-25 Variants,
ioncode_0105_fn25 bam-25 EXON,
ioncode_0105_fn25 bam-25 AAC,
ioncode_0105_fn25 bam-25 AIFOG)
17-11096s1 germline-multisample gatk annotated 17-11096s1
17-11096s1 germline-multisample gatk annotated 17-11097s2
17-11096s1 germline-multisample gatk annotated 17-11098s1
17-11096s1 germline-multisample gatk annotated 17-11099s1
dossier4-di450-2-b00h4r3_hg19_snp annot
r_2016_06_15_14_03_10_user_mx-267-exomess_pool37_5b552 570 872
5500xl_23312002_2013_06_25_exomas16_2h495 processed recal
5500xl_23312002_2013_06_25_exomas16_2h496 processed recal
ca
snps raw-variants selected
snps raw
71161510240931_annotated-4
fakhrieh_salemi gatk snp
fakhrieh_salemi gatk snp
index31
fakhrieh_salemi gatk indel
filter output step3
chh6738_annovar
82937_v1
5840_s17
5516_s23
75_filt_10x
15001702300578a snp-1
qw2315_combined_r1 fastq raw
62388010_s7 mvar 62388010_S7.FREEBAYES
62388010_s7 mvar 62388010_S7.GATK
62388010_s7 mvar 62388010_S7.SAMTOOLS
eb1954_unique
f1 H02H9ALXX_1_F01_K0512P_Human_NoIndex_2-25348_Spuler_Lab_R1
f1 (paired)
f1 trimmed
f1 (paired)
f1 (Reads)
f1 -
f1 locally
f1 realigned
f1 (Variants,
f1 AAC)
allllllllllllyblswd
pdb336 vep
pdb346 vep
327_c879tanxx_gatagaca_l005 bam filtered vep Protein_position
327_c879tanxx_gatagaca_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Codons
327_c879tanxx_gatagaca_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Extra
339_c879tanxx_aaggacac_l005 bam filtered vep Protein_position
327_c879tanxx_gatagaca_l005 bam filtered vep Protein_position
pg_merged_chr19 recode PG1
339_c879tanxx_aaggacac_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Amino_acids
327_c879tanxx_gatagaca_l005 bam filtered vep Codons
339_c879tanxx_aaggacac_l005 bam filtered vep Codons
339_c879tanxx_aaggacac_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Existing_variation
327_c879tanxx_gatagaca_l005 bam filtered vep Extra
339_c879tanxx_aaggacac_l005 bam filtered vep Extra
pg_merged_chr19 recode PG2
pg_merged_chr19 recode PG3
pg_merged_chr19 recode PG4
tz1
tz1
wes_0001 hg19 bwa gatk freebayes combined
fam5 cleaned 3403_16
fam5 cleaned 3404_16
fam5 cleaned 3405_16
fam5 cleaned 3422_16
variants default
variants default
variants default
variants default
cds 3403_16
cds 3404_16
cds 3405_16
cds 3422_16
snps raw-variants selected 3403_16
snps raw-variants selected 3404_16
snps raw-variants selected 3405_16
snps raw-variants selected 3422_16
tsvc_variants_ionxpress_032
24_genetics_snv_99 8 slt
b12
1528098
damold_variant
damold_variant
tumor_sample brca
t30541_annotated_calls
t30541_annotated_calls
tumor_sample brca
nipe_alignment snps
halo_cad_march_17
halo_cad_march_17
mm170835gc
mm171122md
261_emreatak_v1_non-filtered_2016-09-01_06_25_23
upload2ensembl
snps raw MG15-000
snps raw MG15-001
snps raw MG15-002
snps raw SHA-06-33146
watson
sg5_onco_2_s2_v13
rawdata23andme
fam001 NG171210431
fam001 NG171210432
fam001 NG171210433
tsc_7_5_s5_v13
5_s5
5_s5 genome
trio_parsed_vcf15_03359procol_vcf_report overall_15_03359procol_R1_converted_Unique_Output.pjt
trio_parsed_vcf15_03359procol_vcf_report 15_06810matcol
trio_parsed_vcf15_03359procol_vcf_report 15_06811patcol
na12878 recessive
ex-15004
fpd-aix-mes-312-12
fpd-alg-mad-1230-3
jg31048rm_filtered-jrmeena-copy 117543
5517_sorted_hg19
example_snp
er-447_an6 ann hg38_multianno_umd
na12878 compound_heterozygous
552117_ngs_ex
552017_ngs_ex
552217_ngs_ex
annotation final
552217_ngs_ex annotated mendelmd
miller
abdullah_h_mahmood_ngs_032_17 ionxpress_011 r_2017_11_03_08_01_58_user_s5-0138-35-copy_of_ngs_032_17_aip_48_ornek_2
mm180101la
mm180104ea
mm180106mm
mm180110lp
mm180111m
mm180112f
1_s1 genome
1_s1
1_s1
2_s2
3_s3
4_s4
hboc12
10049_haplotypecaller_target
hgcat_input_example-3
child2_indexed
ptc-wgs combined vep gnomad
dels
d233
cpt10
33011510240923_annotated
amal-report-2
073_tsvc_variants
046_tsvc_variants
045_tsvc_variants
044_tsvc_variants
043_tsvc_variants
042_tsvc_variants
033_tsvc_variants
031_tsvc_variants
030_tsvc_variants
sm006-1 both
sm007-1 both
sm008-1 both
55001703319634a raw
01pjhc5_s1_l001_r0trimunpaired_cut_fastqc
01pex6c4_s1_indel_filter_end
mm180211ms
aml-1726_v1_non-filtered_2017-02-26_03_51_07
gt_so_4086_igt_1r
index13_otb1697_gerard goyette_500-049a_human_hex_av5-utr_50x_03232016 deduplicated realigned recalibrated snpeff snpsift
index9_otb1693_gerard goyette_500-049a_human_hex_av5-utr_50x_03232016 deduplicated realigned recalibrated snpeff snpsift
index34_otb3338_gerard goyette_500-049a-2_human_hex_av5-utr_50x_06112016 deduplicated realigned recalibrated snpeff snpsift
18063
21_s21
nist_integratedcalls_12datasets_130517_hethomvarpass_vqsrv2 15
21_s21 genome
gfg_filtered_unphased_genotypes_vcf
schinzel_giedion
432 varscan snp snpann
mng17-30918-p-lin003-patient-0001-e9504_mutation_report1
n2_s17
tsvc_variants_ionxpress_001
tsvc_variants_ionxpress_004
lanjinglingc2017103103501 mkdup sorted genotypegvcf
mmg003343
hodakb10_snp_indel_anno
hodakb12_snp_indel_anno
hodakt10_snp_indel_anno
hodakt12_snp_indel_anno
patient ann filtered
62334902_s25-161111_k00359_0038_bhg532bbxx-normal-illuwes-4f0ca40f-mvar
62334902_s25-161111_k00359_0038_bhg532bbxx-normal-illuwes-4f0ca40f-mvar
mp91583 both
ancestrydna
el-exome_s1
tsvc_variants_ionxpress_001-5225
9040 snpeff high
9040 cleaned_snpindel
9040 snpeff moderate
ex_013_mod
94533-0209701724_ms_onbait
promethease-1
71161510240931_annotated-4
hsp116-ii-1-filtered_variants
annovar hg19_multianno_pass
miller snpeff
s308
s315_9
248419675_annotated
test
variants
tsvc_variants_ionxpress_002-4
tsvc_variants_ionxpress_002-4
annotation final
ex
ex-sf
tsvc_variants_ionxpress_040
ap253-3 final
aaa
acacia
filtered
scz009_trimmed samtools
dnl109758_dez imputed
output 09_chr1 fa filtered3
45655-cr-ensemble
galaxy103-varscan_on_data_102
test
m1_rms1_10
m1_rms1_1
m1_rms1_11
m1_rms1_12
m1_rms1_14
m1_rms1_15
m1_rms1_13
m1_rms1_16
m1_rms1_17
m1_rms1_18
m1_rms1_19
m1_rms1_3
m1_rms1_2
m1_rms1_5
m1_rms1_4
m1_rms1_6
m1_rms1_7
m1_rms1_8
m1_rms1_9
mm180725at
mm180706dm
img-20181008-wa0006
tcga-bf-a1pu-01a-11d-a19a-08
pbrpl18h2_-_sravanthi_filtered_2018-09-27_04_08_32
breast1 1
sample1
mo-mi-abdi1130 final
u697_bwa_picard
164649418_s1 ann select dbsnp
na12877-rep1_s1
na12877-rep1_s1
f txt
f
2-fl-ha_482-01
miller
ctr0100487_mex076_alain_mancinas_201814015100_pass
bra19324freebayes
traning-sample-vcf-file
lapatrada pol indel
22603_s43
22603_s55
ns1-6
ns1-5 final
ns2-5 filtered variants
ns2-10 final
ns4-4
ns4-5
ns4-6
sama-karam_s1
copy-of-pof-ii-1-filtered-snps-indels-query output genome_summary
hsp108-ii-1-filtered_variants
2636_s28
2761_s29
4450_s11
6306_s1
6343_s27
6422_s23
6424_s25
6426_s21
12016_s26
12030_s5
12061_s9
12066_s20
12067_s13
12068_s19
12078_s17
12083_s14
12086_s22
12092_s33
12107_s6
16420_s8
16431_s7
16441_s18
17503_s31
17507_s32
2632_s12
sy-51_s2
sy-52_s3
2632_s12
2632_s12
jp5186_chip
32
na12878 dominant
miller
filtered_merged_a00k
rm-274 final
pm-286 final
diu946-001_results_diu946-001 final
shr
genome_jeffrey_bloom_v5_full_20190110052330
genome_jeffrey_bloom_v5_full_20190110052330
ht12d final
gatk f008 reheader
father
sec-2-18-7_filtered
sample_file
wanguard_s1
cdh6-52
full_combined_excel
miller
my var-final
62455815_s29 mvar
tsvc_variants_ionxpress_002
59876-as-ensemble
59876-as-ensemble
rf3717
56001801068581a snp
56001801066395a snp
56001801066395a indel
fmsd_filtered_snp_indel
180919fr-013-1
tsvc_variants_ioncode_0249
37-g0191 raw_variants
mr
mr
wes 6160 filtered recode
1886106_bak chr20
genome_susan_abernathy_v4_full_20190218171918
drift-nimh_freeze2_brmenn
9etks0122_annotation
17on508_ioncode_0113
a-full_variant_table
gm12878
hd829_190221_nb551050_0207_ahvwygbgx9 germline
solo_-a-star-wars-story-trailer
ctr0100514_mex083_jonathan_resendiz_20190502090400_pass
ctr0100502_mex079_amisaday_mora_20190330015800
200567_mutation_report1_filtered
qmul_trio_lof_assignment_2019
sample_hardfiltered
trio2 snpeff canon annotated exons dhg21091-v
trio2 snpeff canon annotated exons dhg21610-v
trio2 snpeff canon annotated exons dhg21611-v
8wkyncwo
8wkyncwo
mm160117hb v200
skaz004 gatk snp
porto_final_annot intervar_annovar
53586-full_variant_table
53586-full_variant_table
dna-data-2019-03-03
60820188484921_wgz snp-4
gi-variants-passed-homoz
wes_0012 hg38
rcl1126
wt108005 snp
wt108005fu0 snp
wt108005mu0 snp
mm190528hvp
mm190623opd
myexome
54871510242650_annotated-2
aghdas_dehghani qualified
plink
filtered4
filtered2
filtered5
filtered6
mpileup-final_calls_arg_046
111
p001_fim
xah
2_s2
kemikp79
h8m mutect2
001 final
60820188472738 snp
allsamples as snp_indel_pass_annotated
h7 indel_final
h11 snp_final
ashwath_ramji_slb567__wes_annotated_vcf
60820188484090 snp
56001808052608_wgz sv
f70
mr50 2
60820188481224 snp
60820188481224 indel1
yushu_s1 hg19_multianno
lh-2005601_umi hg19_multianno
pcg-f60 allchr snpeff p sal sal10_1 clinvar candidate_genes_tagged
genom_v5_full_20190304173844
144336383-full
144336383-full
moss final
62421900_s18-180124_k00541_0065_bhnjl7bbxx-normal-illuwesagi-76f236ce-freb filt pass
mmcs-209a
trio 2010_06 ychr sites-v2
trio 2010_06 ychr sites-v2
trio 2010_06 ychr sites-v2
file
tsvc_variants_ionxpress_006
f204-1528-proband
f204-1533-proband2
f204-1533-proband2
f204-1533-proband2
cp00040635 filtered indel
cp00040635 filtered snp
s216 g
6-na1287 both
00126 vep
demo1
60820188477917 filtered snp
f000043987_dp5_tag
2019_09_14t01_36_55z_suma_ionxpress_003
azm002
19508-01-01_s2
mm005
bm011
193810-bpl33-fg3374-sal-pi-19-16-4228-rhamppcr2_s123_l001_q20l30_sorted_primtv_snps
dg001 final
83356 33710_s2 smcounter anno
07-ms_s7 filtered vt snps indels annotated hg19_multianno
08-dh_s8 filtered vt snps indels annotated hg19_multianno
09-gf_s9 filtered vt snps indels annotated hg19_multianno
06t10508_snvintersect
95t14234_snvintersect
hht25
60820188482844 cnv
galaxy4-vcfselectsamples__on_data_1
62644690_s62 hpcl fboth pass
62644690_s62 bcfc filt pass
drift-nimh snps indels vqsr qced
62644690_s62 hpcl fboth pass
62644690_s62 bcfc filt pass
