SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

KRT6C,
KRT6C Palmoplantar keratoderma, nonepidermolytic, focal or diffuse, 615735 (3)

Genes at Clinical Genomics Database

KRT6C,
KRT6C Palmoplantar keratoderma, nonepidermolytic, focal or diffuse

Genes at HGMD

Summary

Number of Variants: 8
Number of Genes: 1

Export to: CSV
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KRT6C

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View combined sample_70.variant31 12 rs410562
dbSNP Clinvar
52863038 3841.9 G A PASS 0/1 388 SYNONYMOUS_CODING LOW None 0.25020 0.25020 0.26634 None None None None None None KRT6C|0.012810876|78.64%
View combined sample_70.variant31 12 rs412533
dbSNP Clinvar
52863213 2032.37 C T PASS 0/1 188 NON_SYNONYMOUS_CODING MODERATE None 0.24960 0.24960 0.26749 0.14 0.00 None None None None None None KRT6C|0.012810876|78.64%
View combined sample_70.variant31 12 rs382367
dbSNP Clinvar
52863621 2692.92 T G PASS 0/1 375 SYNONYMOUS_CODING LOW None 0.48602 0.48600 0.47816 None None None None None None KRT6C|0.012810876|78.64%
View combined sample_70.variant31 12 rs11608915
dbSNP Clinvar
52866060 853.25 C T PASS 1/1 136 NON_SYNONYMOUS_CODING MODERATE None 0.40056 0.40060 0.40968 0.02 0.77 None None None None None None KRT6C|0.012810876|78.64%
View combined sample_70.variant31 12 rs419374
dbSNP Clinvar
52867324 469.47 G T PASS 0/1 29 SYNONYMOUS_CODING LOW None 0.25719 0.25720 None None None None None None KRT6C|0.012810876|78.64%
View combined sample_70.variant31 12 rs2885799
dbSNP Clinvar
52867339 871.31 C T PASS 0/1 43 SYNONYMOUS_CODING LOW None 0.25679 0.25680 None None None None None None KRT6C|0.012810876|78.64%
View combined sample_70.variant31 12 rs201833096
dbSNP Clinvar
52867341 892.92 G A PASS 0/1 45 SYNONYMOUS_CODING LOW None 0.25140 0.25140 None None None None None None KRT6C|0.012810876|78.64%
View combined sample_70.variant31 12 rs556681459
dbSNP Clinvar
52867342 892.92 A G PASS 0/1 49 SYNONYMOUS_CODING LOW None 0.25679 0.25680 None None None None None None KRT6C|0.012810876|78.64%
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