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SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
 GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
 EXCLUDE GROUPS:

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SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
 CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP 		ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE 		POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE 		MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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+ Genes 1

Genes:
PLA2G4C,

+ Genes associated with diseases

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 5
Number of Genes: 1

Export to: CSV
  • Page 1 of 1

PLA2G4C
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 94533-0209701724_ms_onbait 19 rs11564538
dbSNP Clinvar 		48601512 182941.49 G A PASS 0/1 62 NON_SYNONYMOUS_CODING MODERATE None 0.04593 0.04593 0.04736 0.16 0.00 None None None None None None PLA2G4C|0.001207325|94.38%
View 94533-0209701724_ms_onbait 19 rs2307281
dbSNP Clinvar 		48558286 486804.73 G A PASS 1/1 22 SYNONYMOUS_CODING LOW None 0.11222 0.11220 0.16554 None None None None None None PLA2G4C|0.001207325|94.38%
View 94533-0209701724_ms_onbait 19 rs10469296
dbSNP Clinvar 		48565087 130756.49 C T PASS 1/1 3 None None None 0.81609 0.81610 0.07 1.00 None None None None None None PLA2G4C|0.001207325|94.38%
View 94533-0209701724_ms_onbait 19 rs156631
dbSNP Clinvar 		48598823 1562754.8 A G PASS 0/1 60 NON_SYNONYMOUS_CODING MODERATE None 0.62919 0.62920 0.48885 1.00 0.00 None None None None None None PLA2G4C|0.001207325|94.38%
View 94533-0209701724_ms_onbait 19 rs251684
dbSNP Clinvar 		48601454 3939615.37 T C PASS 1/1 61 SYNONYMOUS_CODING LOW None 0.66394 0.66390 0.34853 None None None None None None PLA2G4C|0.001207325|94.38%
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