SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

VPS11,
VPS11 Leukodystrophy, hypomyelinating, 12, 616683 (3)

Genes at Clinical Genomics Database

VPS11,
VPS11 Leukodystrophy, hypomyelinating 12

Genes at HGMD

Summary

Number of Variants: 5
Number of Genes: 1

Export to: CSV
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VPS11

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mp91583 both 11 rs5795166
dbSNP Clinvar
118939939 1906.73 T TC . 1/1 50 None None None 0.00128 None None None None None None VPS11|0.32932957|25.52%
View mp91583 both 11 rs1784302
dbSNP Clinvar
118940957 712.77 C G . 0/1 65 SYNONYMOUS_CODING LOW None 0.38319 0.38320 0.43617 None None None None None None VPS11|0.32932957|25.52%
View mp91583 both 11 rs540261
dbSNP Clinvar
118947634 867.77 C T . 0/1 60 SYNONYMOUS_CODING LOW None 0.43191 0.43190 0.36919 None None None None None None VPS11|0.32932957|25.52%
View mp91583 both 11 rs1177562
dbSNP Clinvar
118949331 578.77 C T . 0/1 53 SYNONYMOUS_CODING LOW None 0.33886 0.33890 0.39667 None None None None None None VPS11|0.32932957|25.52%
View mp91583 both 11 rs15818
dbSNP Clinvar
118952173 1661.77 A G . 0/1 101 NON_SYNONYMOUS_CODING MODERATE None 0.35463 0.35460 0.42883 0.42 0.01 None None None None None None VPS11|0.32932957|25.52%
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