SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

GAA,
GAA Glycogen storage disease II, 232300 (3)

Genes at Clinical Genomics Database

GAA,
GAA Glycogen storage disease II

Genes at HGMD

Summary

Number of Variants: 8
Number of Genes: 1

Export to: CSV
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GAA

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View fpd-aix-mes-312-12 17 rs1042395
dbSNP Clinvar
78079669 8887.0 G A PASS 0/1 77 NON_SYNONYMOUS_CODING MODERATE None 0.60244 0.60240 0.32759 0.27 0.02 None None None None None None GAA|0.017886334|75.35%
View fpd-aix-mes-312-12 17 rs1042393
dbSNP Clinvar
78079597 11977.0 A G PASS 0/1 84 NON_SYNONYMOUS_CODING MODERATE None 0.60084 0.60080 0.32746 0.99 0.00 None None None None None None GAA|0.017886334|75.35%
View fpd-aix-mes-312-12 17 rs142626724
dbSNP Clinvar
78081515 432.0 G A PASS 0/1 22 SYNONYMOUS_CODING LOW None 0.00240 0.00240 0.00854 None None None None None None GAA|0.017886334|75.35%
View fpd-aix-mes-312-12 17 rs1800304
dbSNP Clinvar
78082504 9116.0 G A PASS 0/1 73 SYNONYMOUS_CODING LOW None 0.60284 0.60280 0.32923 None None None None None None GAA|0.017886334|75.35%
View fpd-aix-mes-312-12 17 rs1042396
dbSNP Clinvar
78084769 2343.0 G A PASS 0/1 48 SYNONYMOUS_CODING LOW None 0.15955 0.15950 0.20937 None None None None None None GAA|0.017886334|75.35%
View fpd-aix-mes-312-12 17 rs1126690
dbSNP Clinvar
78091405 9953.0 G A PASS 0/1 79 NON_SYNONYMOUS_CODING MODERATE None 0.71186 0.71190 0.26681 0.18 0.00 None None None None None None GAA|0.017886334|75.35%
View fpd-aix-mes-312-12 17 rs1042397
dbSNP Clinvar
78092063 10463.0 G A PASS 0/1 77 SYNONYMOUS_CODING LOW None 0.50939 0.50940 0.39520 None None None None None None GAA|0.017886334|75.35%
View fpd-aix-mes-312-12 17 rs1800300
dbSNP Clinvar
78078709 9696.0 T C PASS 0/1 51 SYNONYMOUS_CODING LOW None 0.71446 0.71450 0.26842 None None None None None None GAA|0.017886334|75.35%
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