SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 11
Number of Genes: 1

Export to: CSV
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NOTCH4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs151131761
dbSNP Clinvar
32184835 1544.77 C T PASS 0/1 111 NON_SYNONYMOUS_CODING MODERATE None 0.01078 0.01078 0.00178 0.00 1.00 5.65 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs8192579
dbSNP Clinvar
32163799 1610.77 T C PASS 0/1 127 SYNONYMOUS_CODING LOW None 0.08427 0.08427 0.06140 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs1044506
dbSNP Clinvar
32172065 6866.77 T G PASS 1/1 176 SYNONYMOUS_CODING LOW None 0.96326 0.96330 0.09663 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs423023
dbSNP Clinvar
32188297 1100.77 G C PASS 0/1 99 SYNONYMOUS_CODING LOW None 0.00060 0.00060 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs422951
dbSNP Clinvar
32188383 1861.77 T C PASS 0/1 136 NON_SYNONYMOUS_CODING MODERATE None 0.34305 0.34310 0.40024 0.42 0.00 -2.28 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs520803
dbSNP Clinvar
32188603 3401.77 C T PASS 0/1 233 SYNONYMOUS_CODING LOW None 0.26777 0.26780 0.28410 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 . 32188640 2052.46 TCT CCC PASS 0/1 193 NON_SYNONYMOUS_CODING MODERATE None None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 . 32191658 695.19 TA... TA... PASS 1/2 17 CODON_INSERTION MODERATE None None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs415929
dbSNP Clinvar
32189032 1972.77 T C PASS 0/1 144 SYNONYMOUS_CODING LOW None 0.27995 0.28000 0.28348 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs443198
dbSNP Clinvar
32190406 2097.77 A G PASS 0/1 153 SYNONYMOUS_CODING LOW None 0.46066 0.46070 0.40397 None None None None None None NOTCH4|0.816387806|5.41%
View 62388010_s7 mvar 62388010_S7.FREEBAYES 6 rs8192569
dbSNP Clinvar
32190484 2217.77 G A PASS 0/1 140 SYNONYMOUS_CODING LOW None 0.21506 0.21510 0.15547 None None None None None None NOTCH4|0.816387806|5.41%
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