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 GROUPS:

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 CHR:

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VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP 		READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
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FREQUENCIES

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EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES 		DBSNP FREQUENCY

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SCORES

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CADD

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+ Genes 1

Genes:
LRRK2,

+ Genes associated with diseases 1

Genes at Omim

LRRK2,
LRRK2 {Parkinson disease 8}, 607060 (3)

Genes at Clinical Genomics Database

LRRK2,
LRRK2 Parkinson disease 8
Dementia, Lewy body

Genes at HGMD

Summary

Number of Variants: 3
Number of Genes: 1

Export to: CSV
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LRRK2
Omim - GeneCards - NCBI
Options Individual Chr
 RsId
 Pos
 Qual
 Ref
 Alt
 Filter Gen
 Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View trf_44289 12 rs7308720
dbSNP Clinvar 		40657700 779.28 C G PASS 0/1 73 NON_SYNONYMOUS_CODING MODERATE None 0.09944 0.09944 0.09460 0.01 0.97 3.47 None None . . . None LRRK2|0.540464991|14.19%
View trf_44289 12 rs7133914
dbSNP Clinvar 		40702911 1727.43 G A PASS 0/1 147 NON_SYNONYMOUS_CODING MODERATE None 0.10044 0.10040 0.09288 0.12 0.33 3.36 None None . . . None LRRK2|0.540464991|14.19%
View trf_44289 12 rs3761863
dbSNP Clinvar 		40758652 3488.97 T C PASS 1/1 113 NON_SYNONYMOUS_CODING MODERATE None 0.55172 0.55170 0.38773 0.81 0.00 -2.42 None None . . . None LRRK2|0.540464991|14.19%
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