Name: sample_cs2-dmso_recalibrated_variants_snps_only_hard_filtered_snps_only
Variants: 213363
Novel Variants: 21112 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 213363 97291 0/1 24 0/2 115967 1/1 58 1/2 23 2/2
Total Gene-associated SNVs 213363 97291 0/1 24 0/2 115967 1/1 58 1/2 23 2/2

Type Total Variants
MOTIF[MA0003.1:Ap2alpha]23
MOTIF[MA0014.1:Pax5]13
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]3
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]21
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]38
MOTIF[MA0065.1:PPARG]5
MOTIF[MA0065.2:PPARG]3
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]27
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]4
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]13
MOTIF[MA0095.1:Yy1]17
MOTIF[MA0099.1:Cfos]6
MOTIF[MA0099.2:AP1]5
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]18
MOTIF[MA0139.1:CTCF]149
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]9
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]45
NON_SYNONYMOUS_CODING14213
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION342
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS221
SPLICE_SITE_REGION49
SPLICE_SITE_REGION+SYNONYMOUS_CODING280
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED425
START_LOST23
STOP_GAINED327
STOP_GAINED+SPLICE_SITE_REGION8
STOP_LOST33
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12936
SYNONYMOUS_STOP15
None0

Type Total Variants
1160
MISSENSE14616
NONSENSE335
SILENT13232
None0

Type Total Variants
HIGH620
LOW13858
MODERATE14555
MODIFIER310
None0

Type Total Variants
LowQual3
LowQual;Sample_CS2-DMSO_recalibrated_variants_SNPS_only_Hard_Filtered_SNPS_only9165
PASS1
Sample_CS2-DMSO_recalibrated_variants_SNPS_only_Hard_Filtered_SNPS_only186624
Sample_CS2-DMSO_recalibrated_variants_SNPS_only_Hard_Filtered_SNPS_only;VQSRTrancheSNP99.00to99.9011192
Sample_CS2-DMSO_recalibrated_variants_SNPS_only_Hard_Filtered_SNPS_only;VQSRTrancheSNP99.90to100.006378

Quality Value
Min10.03
Average2392.43375828833
Max85937.34

Read Depth Value
Min0
Average22.541068507660654
Max494

Type Total Variants
None0
24
5|51

Chromossome Total Variants
121826
1010377
1111896
1211322
134304
147408
156781
169156
1711598
183576
1911778
213049
205290
213336
225313
312187
49528
58768
611740
712798
88431
99323
MT23
X2970
Y585