Name: sp16_961
Variants: 36514
Novel Variants: 836 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 50 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 25 |
| CODON_DELETION | 28 |
| CODON_INSERTION | 24 |
| FRAME_SHIFT | 130 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 26 |
| FRAME_SHIFT+START_LOST | 2 |
| FRAME_SHIFT+STOP_GAINED | 2 |
| FRAME_SHIFT+STOP_LOST | 3 |
| GENE_FUSION | 1 |
| MOTIF_DELETED | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 4 |
| MOTIF[MA0014.1:Pax5] | 1 |
| MOTIF[MA0024.1:E2F1] | 1 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0058.1:Max] | 3 |
| MOTIF[MA0062.1:Gabp] | 1 |
| MOTIF[MA0062.2:Gabp] | 6 |
| MOTIF[MA0079.1:SP1] | 1 |
| MOTIF[MA0079.2:SP1] | 4 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0080.2:PU1] | 1 |
| MOTIF[MA0093.1:USF1] | 1 |
| MOTIF[MA0095.1:Yy1] | 3 |
| MOTIF[MA0114.1:HNF4A] | 1 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 11 |
| MOTIF[MA0147.1:Cmyc] | 1 |
| NON_SYNONYMOUS_CODING | 8248 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 188 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 133 |
| SPLICE_SITE_REGION | 16 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 222 |
| START_GAINED | 137 |
| START_LOST | 10 |
| STOP_GAINED | 56 |
| STOP_LOST | 18 |
| STOP_LOST+SPLICE_SITE_REGION | 4 |
| SYNONYMOUS_CODING | 9520 |
| SYNONYMOUS_STOP | 9 |
| TRANSCRIPT | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 36514 |
| Quality | Value |
|---|---|
| Min | 10.0 |
| Average | 370.234131300323 |
| Max | 2995.62 |
| Read Depth | Value |
|---|---|
| Min | 5 |
| Average | 71.9359971517774 |
| Max | 823 |