Name: sp16_961
Variants: 36514
Novel Variants: 836 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 50 |
CODON_CHANGE_PLUS_CODON_INSERTION | 25 |
CODON_DELETION | 28 |
CODON_INSERTION | 24 |
FRAME_SHIFT | 130 |
FRAME_SHIFT+SPLICE_SITE_REGION | 26 |
FRAME_SHIFT+START_LOST | 2 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_LOST | 3 |
GENE_FUSION | 1 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 4 |
MOTIF[MA0014.1:Pax5] | 1 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0058.1:Max] | 3 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0062.2:Gabp] | 6 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 4 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0093.1:USF1] | 1 |
MOTIF[MA0095.1:Yy1] | 3 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0138.2:Nrsf] | 1 |
MOTIF[MA0139.1:CTCF] | 11 |
MOTIF[MA0147.1:Cmyc] | 1 |
NON_SYNONYMOUS_CODING | 8248 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 188 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 133 |
SPLICE_SITE_REGION | 16 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 222 |
START_GAINED | 137 |
START_LOST | 10 |
STOP_GAINED | 56 |
STOP_LOST | 18 |
STOP_LOST+SPLICE_SITE_REGION | 4 |
SYNONYMOUS_CODING | 9520 |
SYNONYMOUS_STOP | 9 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
None | 0 |
Type | Total Variants |
---|---|
PASS | 36514 |
Quality | Value |
---|---|
Min | 10.0 |
Average | 370.234131300323 |
Max | 2995.62 |
Read Depth | Value |
---|---|
Min | 5 |
Average | 71.9359971517774 |
Max | 823 |