Name: mk268 final
Variants: 95995
Novel Variants: 1021 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 95995 57436 0/1 38415 1/1 144 1/2
Total Gene-associated SNVs 95995 57436 0/1 38415 1/1 144 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION139
CODON_CHANGE_PLUS_CODON_INSERTION94
CODON_DELETION47
CODON_INSERTION74
FRAME_SHIFT238
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED6
FRAME_SHIFT+STOP_LOST4
GENE_FUSION_REVERESE1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]27
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]16
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]74
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]11
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]17
NON_SYNONYMOUS_CODING10992
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION246
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS249
SPLICE_SITE_REGION36
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING253
START_GAINED225
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED110
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11562
SYNONYMOUS_STOP9
TRANSCRIPT1
None0

Type Total Variants
1386
MISSENSE11273
NONSENSE113
SILENT11824
None0

Type Total Variants
HIGH696
LOW12181
MODERATE11595
MODIFIER124
None0

Type Total Variants
MG_INDEL_Filter73
MG_SNP_Filter3164
PASS92758

Quality Value
Min30.29
Average858.665903119637
Max45189.77

Read Depth Value
Min0
Average45.776165425282564
Max1515

Type Total Variants
None0

Chromossome Total Variants
19710
104302
116087
125488
131734
143610
153345
164297
175492
181643
196608
26893
202471
211431
222565
35058
43698
54177
63913
75098
83323
93874
X1093
Y85