Name: fls_f1
Variants: 231765
Novel Variants: 226869 (Not in latest DbSNP Build)
| Type | Total Variants | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total SNVs | 231765 | 70 .|. | 572 0|0 | 17089 0|1 | 107346 0/1 | 379 0|2 | 3051 0/2 | 39 0|3 | 460 0/3 | 5 0|4 | 101 0/4 | 4 0|5 | 21 0/5 | 1 0/6 | 11156 1|1 | 87844 1/1 | 1856 1/2 | 260 1/3 | 41 1/4 | 13 1/5 | 2 1/6 | 233 2|2 | 691 2/2 | 279 2/3 | 62 2/4 | 12 2/5 | 6 2/6 | 18 3|3 | 62 3/3 | 39 3/4 | 9 3/5 | 1 3/6 | 3 4|4 | 16 4/4 | 9 4/5 | 1 4/6 | 6 5/5 | 2 5/6 | 6 6/6 |
| Total Gene-associated SNVs | 231765 | 70 .|. | 572 0|0 | 17089 0|1 | 107346 0/1 | 379 0|2 | 3051 0/2 | 39 0|3 | 460 0/3 | 5 0|4 | 101 0/4 | 4 0|5 | 21 0/5 | 1 0/6 | 11156 1|1 | 87844 1/1 | 1856 1/2 | 260 1/3 | 41 1/4 | 13 1/5 | 2 1/6 | 233 2|2 | 691 2/2 | 279 2/3 | 62 2/4 | 12 2/5 | 6 2/6 | 18 3|3 | 62 3/3 | 39 3/4 | 9 3/5 | 1 3/6 | 3 4|4 | 16 4/4 | 9 4/5 | 1 4/6 | 6 5/5 | 2 5/6 | 6 6/6 |
| Type | Total Variants |
|---|---|
| 1137 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 24 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 15 |
| CODON_DELETION | 13 |
| CODON_INSERTION | 12 |
| FRAME_SHIFT | 621 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 20 |
| FRAME_SHIFT+START_LOST | 1 |
| FRAME_SHIFT+STOP_GAINED | 13 |
| FRAME_SHIFT+STOP_LOST | 5 |
| MOTIF_DELETED | 3 |
| MOTIF[MA0003.1:Ap2alpha] | 11 |
| MOTIF[MA0014.1:Pax5] | 3 |
| MOTIF[MA0016.1:RXRA] | 2 |
| MOTIF[MA0024.1:E2F1] | 2 |
| MOTIF[MA0035.2:Gata1] | 3 |
| MOTIF[MA0036.1:Gata2] | 5 |
| MOTIF[MA0047.2:FOXA2] | 4 |
| MOTIF[MA0058.1:Max] | 18 |
| MOTIF[MA0059.1:Cmyc] | 6 |
| MOTIF[MA0062.1:Gabp] | 4 |
| MOTIF[MA0062.2:Gabp] | 19 |
| MOTIF[MA0065.1:PPARG] | 4 |
| MOTIF[MA0065.2:PPARG] | 2 |
| MOTIF[MA0079.1:SP1] | 6 |
| MOTIF[MA0079.2:SP1] | 11 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0080.2:PU1] | 11 |
| MOTIF[MA0083.1:Srf] | 1 |
| MOTIF[MA0093.1:USF1] | 12 |
| MOTIF[MA0095.1:Yy1] | 4 |
| MOTIF[MA0099.1:Cfos] | 8 |
| MOTIF[MA0099.2:AP1] | 10 |
| MOTIF[MA0105.1:NFKB] | 2 |
| MOTIF[MA0114.1:HNF4A] | 11 |
| MOTIF[MA0115.1:RNR1H2] | 1 |
| MOTIF[MA0138.2:Nrsf] | 9 |
| MOTIF[MA0139.1:CTCF] | 109 |
| MOTIF[MA0147.1:Cmyc] | 13 |
| MOTIF[MA0148.1:FOXA1] | 6 |
| MOTIF[MA0154.1:EBF] | 11 |
| MOTIF[MA0159.1:RXR] | 2 |
| MOTIF[MA0162.1:Egr1] | 10 |
| NON_SYNONYMOUS_CODING | 2600 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 73 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 94 |
| SPLICE_SITE_REGION | 22 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 2 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 58 |
| START_GAINED | 76 |
| START_LOST | 6 |
| STOP_GAINED | 134 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 4 |
| STOP_GAINED+SPLICE_SITE_REGION | 7 |
| STOP_LOST | 10 |
| STOP_LOST+CODON_DELETION | 1 |
| SYNONYMOUS_CODING | 2068 |
| SYNONYMOUS_START | 2 |
| SYNONYMOUS_STOP | 3 |
| None | 0 |
| Type | Total Variants |
|---|---|
| . | 231765 |
| Quality | Value |
|---|---|
| Min | 30.0 |
| Average | 13016.4734862899 |
| Max | 538777.91 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 0.0 |
| Max | 0 |
| Type | Total Variants |
|---|---|
| None | 0 |