Name: c1-bcemep2073 snp indel excludeflt grch38
Variants: 119021
Novel Variants: 116266 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 119021 74377 0/1 44182 1/1 462 1/2
Total Gene-associated SNVs 119021 74377 0/1 44182 1/1 462 1/2

Type Total Variants
907
CODON_CHANGE_PLUS_CODON_DELETION16
CODON_CHANGE_PLUS_CODON_INSERTION9
CODON_DELETION8
CODON_INSERTION13
FRAME_SHIFT130
FRAME_SHIFT+SPLICE_SITE_REGION4
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED4
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]8
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]16
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]1
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]7
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]6
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]70
MOTIF[MA0147.1:Cmyc]15
MOTIF[MA0148.1:FOXA1]5
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]9
NON_SYNONYMOUS_CODING1709
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION61
NON_SYNONYMOUS_START2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS58
SPLICE_SITE_REGION14
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING43
START_GAINED40
START_LOST6
STOP_GAINED73
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION3
STOP_GAINED+SPLICE_SITE_REGION5
STOP_LOST6
SYNONYMOUS_CODING1436
SYNONYMOUS_START2
None0

Type Total Variants
2241
MISSENSE1784
NONSENSE78
SILENT648
None0

Type Total Variants
HIGH291
LOW1595
MODERATE1817
MODIFIER1048
None0

Type Total Variants
PASS119021

Quality Value
Min30.39
Average769.52720788802
Max23116.06

Read Depth Value
Min1
Average42.4227909360533
Max515

Type Total Variants
None0

Chromossome Total Variants
111092
105544
116464
126251
132507
143983
154066
165036
176601
181956
197767
28180
203567
212034
223215
36438
44935
55207
66686
76190
84455
95171
X1292
Y384