Name: p1-bcemep2058 snp indel excludeflt grch38
Variants: 96632
Novel Variants: 94446 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 96632 61240 0/1 35075 1/1 317 1/2
Total Gene-associated SNVs 96632 61240 0/1 35075 1/1 317 1/2

Type Total Variants
653
CODON_CHANGE_PLUS_CODON_DELETION12
CODON_CHANGE_PLUS_CODON_INSERTION9
CODON_DELETION11
CODON_INSERTION12
FRAME_SHIFT106
FRAME_SHIFT+SPLICE_SITE_REGION4
FRAME_SHIFT+STOP_GAINED3
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.2:Gabp]11
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]59
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0148.1:FOXA1]4
MOTIF[MA0154.1:EBF]6
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]4
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING1536
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION54
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS50
SPLICE_SITE_REGION11
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING33
START_GAINED41
START_LOST3
STOP_GAINED76
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION3
STOP_GAINED+SPLICE_SITE_REGION5
STOP_LOST6
SYNONYMOUS_CODING1257
SYNONYMOUS_START1
SYNONYMOUS_STOP2
None0

Type Total Variants
1784
MISSENSE1599
NONSENSE81
SILENT593
None0

Type Total Variants
HIGH257
LOW1402
MODERATE1635
MODIFIER763
None0

Type Total Variants
PASS96632

Quality Value
Min30.04
Average663.877642809956
Max8106.06

Read Depth Value
Min3
Average37.752752711317164
Max244

Type Total Variants
None0

Chromossome Total Variants
18824
103961
115883
124842
131974
143329
153495
164517
175223
181574
197109
26448
202558
211282
222606
35187
43868
54057
65587
75262
83491
93940
X1344
Y271