Name: 04-cn_s4
Variants: 28520
Novel Variants: 8141 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 28520 12593 0/1 6 1 15890 1/1 31 1/2
Total Gene-associated SNVs 28520 12593 0/1 6 1 15890 1/1 31 1/2

Type Total Variants
48
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0058.1:Max]11
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.2:Gabp]4
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]15
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING276
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS12
SPLICE_SITE_REGION+SYNONYMOUS_CODING4
START_GAINED10
STOP_GAINED8
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST1
SYNONYMOUS_CODING198
None0

Type Total Variants
155
MISSENSE283
NONSENSE9
SILENT202
None0

Type Total Variants
HIGH22
LOW243
MODERATE282
MODIFIER102
None0

Type Total Variants
LowGQXHetDel;OffTarget31
LowGQXHetIns;LowGQXHetDel;OffTarget1
LowGQXHetIns;OffTarget38
LowGQXHetSNP1
LowGQXHetSNP;OffTarget9273
LowGQX;HighDPFRatio;OffTarget81
LowGQXHomSNP1
LowGQXHomSNP;LowGQXHetDel;OffTarget5
LowGQXHomSNP;OffTarget15300
LowGQX;LowGQXHetDel;OffTarget3
LowGQX;LowGQXHetIns;OffTarget4
LowGQX;LowGQXHomIns;OffTarget2
LowGQX;OffTarget2699
OffTarget975
PASS101
SiteConflict;LowGQXHetSNP;LowGQXHetDel;OffTarget1
SiteConflict;LowGQXHetSNP;OffTarget3
SiteConflict;LowGQXHomSNP;LowGQXHetDel;OffTarget1

Quality Value
Min0.0
Average53.8193197755961
Max3070.0

Read Depth Value
Min0
Average6.229347826086957
Max1854

Type Total Variants
None0

Chromossome Total Variants
12267
101927
111256
121063
13654
14805
15799
161692
171109
18933
191061
22393
20728
21575
22640
31360
41733
51277
61351
71369
81218
91176
M48
X469
Y617