Name: 04-cn_s4
Variants: 28520
Novel Variants: 8141 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
48 | |
MOTIF[MA0003.1:Ap2alpha] | 1 |
MOTIF[MA0014.1:Pax5] | 2 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0035.1:Gata1] | 1 |
MOTIF[MA0058.1:Max] | 11 |
MOTIF[MA0059.1:Cmyc] | 2 |
MOTIF[MA0062.2:Gabp] | 4 |
MOTIF[MA0079.1:SP1] | 2 |
MOTIF[MA0079.2:SP1] | 17 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0093.1:USF1] | 3 |
MOTIF[MA0099.1:Cfos] | 1 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0105.1:NFKB] | 1 |
MOTIF[MA0114.1:HNF4A] | 3 |
MOTIF[MA0138.2:Nrsf] | 2 |
MOTIF[MA0139.1:CTCF] | 15 |
MOTIF[MA0147.1:Cmyc] | 2 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0159.1:RXR] | 1 |
MOTIF[MA0162.1:Egr1] | 11 |
NON_SYNONYMOUS_CODING | 276 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 6 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 12 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 4 |
START_GAINED | 10 |
STOP_GAINED | 8 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 1 |
SYNONYMOUS_CODING | 198 |
None | 0 |
Type | Total Variants |
---|---|
LowGQXHetDel;OffTarget | 31 |
LowGQXHetIns;LowGQXHetDel;OffTarget | 1 |
LowGQXHetIns;OffTarget | 38 |
LowGQXHetSNP | 1 |
LowGQXHetSNP;OffTarget | 9273 |
LowGQX;HighDPFRatio;OffTarget | 81 |
LowGQXHomSNP | 1 |
LowGQXHomSNP;LowGQXHetDel;OffTarget | 5 |
LowGQXHomSNP;OffTarget | 15300 |
LowGQX;LowGQXHetDel;OffTarget | 3 |
LowGQX;LowGQXHetIns;OffTarget | 4 |
LowGQX;LowGQXHomIns;OffTarget | 2 |
LowGQX;OffTarget | 2699 |
OffTarget | 975 |
PASS | 101 |
SiteConflict;LowGQXHetSNP;LowGQXHetDel;OffTarget | 1 |
SiteConflict;LowGQXHetSNP;OffTarget | 3 |
SiteConflict;LowGQXHomSNP;LowGQXHetDel;OffTarget | 1 |
Quality | Value |
---|---|
Min | 0.0 |
Average | 53.8193197755961 |
Max | 3070.0 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 6.229347826086957 |
Max | 1854 |
Type | Total Variants |
---|---|
None | 0 |