Name: galaxy7-vcffilter__3466nr42
Variants: 102403
Novel Variants: 15295 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 102403 59445 0/1 5 0/2 41654 1/1 1299 1/2
Total Gene-associated SNVs 102403 59445 0/1 5 0/2 41654 1/1 1299 1/2

Type Total Variants
38
CODON_CHANGE_PLUS_CODON_DELETION60
CODON_CHANGE_PLUS_CODON_INSERTION60
CODON_DELETION100
CODON_INSERTION82
FRAME_SHIFT161
FRAME_SHIFT+NON_SYNONYMOUS_CODING13
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION2
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING1
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+SYNONYMOUS_CODING2
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]29
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]23
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]10
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]76
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]31
NON_SYNONYMOUS_CODING10648
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_DELETION3
NON_SYNONYMOUS_CODING+CODON_INSERTION3
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION233
NON_SYNONYMOUS_START3
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS254
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING249
START_GAINED243
START_LOST14
STOP_GAINED98
STOP_GAINED+SPLICE_SITE_REGION1
STOP_GAINED+SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_LOST23
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11164
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
SYNONYMOUS_CODING+CODON_DELETION3
SYNONYMOUS_STOP10
TRANSCRIPT4
None0

Type Total Variants
1866
MISSENSE10496
NONSENSE89
SILENT11370
None0

Type Total Variants
HIGH627
LOW11806
MODERATE11195
MODIFIER193
None0

Type Total Variants
.102403

Quality Value
Min20.0099
Average841.290817973107
Max46862.6

Read Depth Value
Min11
Average51.918059041239026
Max6346

Type Total Variants
None0

Chromossome Total Variants
19753
104303
115731
124942
132096
143370
153452
164599
175907
181940
197019
27506
202499
211572
222420
35579
44207
54349
66182
75086
83788
94182
M38
X1128
Y755