Name: galaxy7-vcffilter__3466nr42
Variants: 102403
Novel Variants: 15295 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| 38 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 60 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 60 |
| CODON_DELETION | 100 |
| CODON_INSERTION | 82 |
| FRAME_SHIFT | 161 |
| FRAME_SHIFT+NON_SYNONYMOUS_CODING | 13 |
| FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 2 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 42 |
| FRAME_SHIFT+STOP_GAINED | 4 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING | 1 |
| FRAME_SHIFT+STOP_LOST | 3 |
| FRAME_SHIFT+SYNONYMOUS_CODING | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 18 |
| MOTIF[MA0014.1:Pax5] | 5 |
| MOTIF[MA0024.1:E2F1] | 4 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 1 |
| MOTIF[MA0047.2:FOXA2] | 2 |
| MOTIF[MA0058.1:Max] | 15 |
| MOTIF[MA0059.1:Cmyc] | 3 |
| MOTIF[MA0062.1:Gabp] | 4 |
| MOTIF[MA0062.2:Gabp] | 29 |
| MOTIF[MA0065.1:PPARG] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0079.1:SP1] | 5 |
| MOTIF[MA0079.2:SP1] | 23 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0080.2:PU1] | 2 |
| MOTIF[MA0083.1:Srf] | 1 |
| MOTIF[MA0093.1:USF1] | 6 |
| MOTIF[MA0095.1:Yy1] | 10 |
| MOTIF[MA0099.1:Cfos] | 2 |
| MOTIF[MA0114.1:HNF4A] | 4 |
| MOTIF[MA0138.1:Nrsf] | 1 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 76 |
| MOTIF[MA0147.1:Cmyc] | 10 |
| MOTIF[MA0154.1:EBF] | 3 |
| MOTIF[MA0162.1:Egr1] | 31 |
| NON_SYNONYMOUS_CODING | 10648 |
| NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| NON_SYNONYMOUS_CODING+CODON_DELETION | 3 |
| NON_SYNONYMOUS_CODING+CODON_INSERTION | 3 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 233 |
| NON_SYNONYMOUS_START | 3 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 254 |
| SPLICE_SITE_REGION | 28 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 249 |
| START_GAINED | 243 |
| START_LOST | 14 |
| STOP_GAINED | 98 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| STOP_LOST | 23 |
| STOP_LOST+CODON_DELETION | 1 |
| STOP_LOST+SPLICE_SITE_REGION | 2 |
| SYNONYMOUS_CODING | 11164 |
| SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SYNONYMOUS_CODING+CODON_DELETION | 3 |
| SYNONYMOUS_STOP | 10 |
| TRANSCRIPT | 4 |
| None | 0 |
| Type | Total Variants |
|---|---|
| . | 102403 |
| Quality | Value |
|---|---|
| Min | 20.0099 |
| Average | 841.290817973107 |
| Max | 46862.6 |
| Read Depth | Value |
|---|---|
| Min | 11 |
| Average | 51.918059041239026 |
| Max | 6346 |
| Type | Total Variants |
|---|---|
| None | 0 |