Name: galaxy7-vcffilter__3466nr40
Variants: 119870
Novel Variants: 20754 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 119870 78196 0/1 9 0/2 39319 1/1 2346 1/2
Total Gene-associated SNVs 119870 78196 0/1 9 0/2 39319 1/1 2346 1/2

Type Total Variants
40
CODON_CHANGE_PLUS_CODON_DELETION68
CODON_CHANGE_PLUS_CODON_INSERTION54
CODON_DELETION102
CODON_INSERTION92
FRAME_SHIFT177
FRAME_SHIFT+NON_SYNONYMOUS_CODING24
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+SPLICE_SITE_REGION+SYNONYMOUS_CODING1
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING1
FRAME_SHIFT+STOP_LOST5
FRAME_SHIFT+SYNONYMOUS_CODING6
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]15
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]25
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]38
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]11
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]96
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]35
NON_SYNONYMOUS_CODING12051
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
NON_SYNONYMOUS_CODING+CODON_DELETION2
NON_SYNONYMOUS_CODING+CODON_INSERTION4
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION248
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS7
PROTEIN_STRUCTURAL_INTERACTION_LOCUS275
SPLICE_SITE_REGION29
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING250
START_GAINED258
START_LOST14
STOP_GAINED121
STOP_LOST22
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12202
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION2
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_INSERTION1
SYNONYMOUS_CODING+CODON_DELETION3
SYNONYMOUS_CODING+CODON_INSERTION1
SYNONYMOUS_STOP13
TRANSCRIPT2
None0

Type Total Variants
2213
MISSENSE11723
NONSENSE108
SILENT12390
None0

Type Total Variants
HIGH708
LOW12877
MODERATE12631
MODIFIER218
None0

Type Total Variants
.119870

Quality Value
Min20.0089
Average1416.82102116627
Max76664.5

Read Depth Value
Min11
Average92.97065988153834
Max7546

Type Total Variants
None0

Chromossome Total Variants
111024
105513
116745
125599
132448
144077
154089
165651
176565
182262
197860
29186
202965
212014
222878
36124
45116
54931
66406
76313
84110
95122
M40
X1398
Y1434