Name: galaxy7-vcffilter__3466nr3
Variants: 145304
Novel Variants: 26551 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 145304 93996 0/1 14 0/2 48281 1/1 3013 1/2
Total Gene-associated SNVs 145304 93996 0/1 14 0/2 48281 1/1 3013 1/2

Type Total Variants
41
CODON_CHANGE_PLUS_CODON_DELETION70
CODON_CHANGE_PLUS_CODON_INSERTION66
CODON_DELETION110
CODON_INSERTION96
FRAME_SHIFT174
FRAME_SHIFT+NON_SYNONYMOUS_CODING23
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING1
FRAME_SHIFT+STOP_LOST5
FRAME_SHIFT+SYNONYMOUS_CODING3
MOTIF[MA0003.1:Ap2alpha]24
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]11
MOTIF[MA0062.2:Gabp]32
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]34
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]2
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]13
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]109
MOTIF[MA0147.1:Cmyc]8
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]9
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]38
NON_SYNONYMOUS_CODING12095
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION3
NON_SYNONYMOUS_CODING+CODON_DELETION2
NON_SYNONYMOUS_CODING+CODON_INSERTION5
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION249
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS278
SPLICE_SITE_REGION40
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING259
START_GAINED294
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED122
STOP_GAINED+SPLICE_SITE_REGION1
STOP_GAINED+SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_LOST26
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12258
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION2
SYNONYMOUS_CODING+CODON_DELETION3
SYNONYMOUS_STOP10
TRANSCRIPT4
None0

Type Total Variants
2328
MISSENSE11773
NONSENSE108
SILENT12460
None0

Type Total Variants
HIGH701
LOW13004
MODERATE12703
MODIFIER261
None0

Type Total Variants
.145304

Quality Value
Min20.01
Average1092.07723705198
Max137408.0

Read Depth Value
Min11
Average75.01725348235423
Max7723

Type Total Variants
None0

Chromossome Total Variants
113014
107403
117958
126707
132938
144404
154493
166912
177898
182968
199090
211311
203465
212804
223442
37411
46364
55759
67868
77681
84887
96349
M41
X1739
Y2398