Name: a
Variants: 105516
Novel Variants: 7942 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 105516 58815 0/1 46299 1/1 402 1/2
Total Gene-associated SNVs 105516 58815 0/1 46299 1/1 402 1/2

Type Total Variants
7
CODON_CHANGE_PLUS_CODON_DELETION83
CODON_CHANGE_PLUS_CODON_INSERTION94
CODON_DELETION136
CODON_INSERTION152
FRAME_SHIFT99
FRAME_SHIFT+SPLICE_SITE_REGION44
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION2
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]24
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]32
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]14
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]9
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]78
MOTIF[MA0147.1:Cmyc]9
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]28
NON_SYNONYMOUS_CODING10519
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION220
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS225
SPLICE_SITE_REGION34
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION4
SPLICE_SITE_REGION+SYNONYMOUS_CODING247
START_GAINED261
START_LOST8
STOP_GAINED83
STOP_GAINED+CODON_INSERTION3
STOP_GAINED+SPLICE_SITE_REGION1
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION1
STOP_LOST18
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11132
SYNONYMOUS_STOP9
TRANSCRIPT4
None0

Type Total Variants
1420
MISSENSE10769
NONSENSE84
SILENT11388
None0

Type Total Variants
HIGH493
LOW11803
MODERATE11210
MODIFIER155
None0

Type Total Variants
PASS105516

Quality Value
Min101.0
Average202.602354145343
Max228.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
111190
105350
116367
125372
132028
143073
153803
164889
175819
182121
197197
27544
202382
211590
222671
35680
44340
54287
64438
75541
83444
94945
M7
X1235
Y203