Name: a
Variants: 105516
Novel Variants: 7942 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
7 | |
CODON_CHANGE_PLUS_CODON_DELETION | 83 |
CODON_CHANGE_PLUS_CODON_INSERTION | 94 |
CODON_DELETION | 136 |
CODON_INSERTION | 152 |
FRAME_SHIFT | 99 |
FRAME_SHIFT+SPLICE_SITE_REGION | 44 |
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 2 |
FRAME_SHIFT+STOP_LOST | 3 |
GENE_FUSION | 1 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 24 |
MOTIF[MA0014.1:Pax5] | 4 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 6 |
MOTIF[MA0035.1:Gata1] | 1 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0047.1:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 15 |
MOTIF[MA0059.1:Cmyc] | 7 |
MOTIF[MA0062.1:Gabp] | 4 |
MOTIF[MA0062.2:Gabp] | 32 |
MOTIF[MA0065.2:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 4 |
MOTIF[MA0079.2:SP1] | 14 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0093.1:USF1] | 6 |
MOTIF[MA0095.1:Yy1] | 9 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 7 |
MOTIF[MA0138.2:Nrsf] | 5 |
MOTIF[MA0139.1:CTCF] | 78 |
MOTIF[MA0147.1:Cmyc] | 9 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0159.1:RXR] | 1 |
MOTIF[MA0162.1:Egr1] | 28 |
NON_SYNONYMOUS_CODING | 10519 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 220 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 225 |
SPLICE_SITE_REGION | 34 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+CODON_INSERTION | 4 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 247 |
START_GAINED | 261 |
START_LOST | 8 |
STOP_GAINED | 83 |
STOP_GAINED+CODON_INSERTION | 3 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION | 1 |
STOP_LOST | 18 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 11132 |
SYNONYMOUS_STOP | 9 |
TRANSCRIPT | 4 |
None | 0 |
Type | Total Variants |
---|---|
PASS | 105516 |
Quality | Value |
---|---|
Min | 101.0 |
Average | 202.602354145343 |
Max | 228.0 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 0.0 |
Max | 0 |
Type | Total Variants |
---|---|
None | 0 |