Name: galaxy36-vcffilter__3466nr4
Variants: 106525
Novel Variants: 16640 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 106525 65303 0/1 5 0/2 39735 1/1 1482 1/2
Total Gene-associated SNVs 106525 65303 0/1 5 0/2 39735 1/1 1482 1/2

Type Total Variants
32
CODON_CHANGE_PLUS_CODON_DELETION66
CODON_CHANGE_PLUS_CODON_INSERTION55
CODON_DELETION100
CODON_INSERTION100
FRAME_SHIFT155
FRAME_SHIFT+NON_SYNONYMOUS_CODING14
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_GAINED+NON_SYNONYMOUS_CODING1
FRAME_SHIFT+STOP_GAINED+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING1
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+SYNONYMOUS_CODING3
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]17
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]23
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]25
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]77
MOTIF[MA0147.1:Cmyc]6
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]31
NON_SYNONYMOUS_CODING11030
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION2
NON_SYNONYMOUS_CODING+CODON_DELETION2
NON_SYNONYMOUS_CODING+CODON_INSERTION5
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION242
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS266
SPLICE_SITE_REGION29
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING247
START_GAINED261
START_LOST14
STOP_GAINED90
STOP_LOST24
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11442
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION2
SYNONYMOUS_CODING+CODON_DELETION3
SYNONYMOUS_STOP11
TRANSCRIPT3
None0

Type Total Variants
1899
MISSENSE10894
NONSENSE79
SILENT11650
None0

Type Total Variants
HIGH629
LOW12102
MODERATE11608
MODIFIER183
None0

Type Total Variants
.106525

Quality Value
Min20.0009
Average740.55900526543
Max99529.0

Read Depth Value
Min8
Average49.47402018305562
Max5576

Type Total Variants
None0

Chromossome Total Variants
19847
104999
116041
125223
132158
143414
153372
165270
176100
182001
196697
27967
202339
211802
222386
35721
44544
54520
66060
75497
83784
94389
M32
X1272
Y1090