Name: msp09 snp
Variants: 103609
Novel Variants: 1096 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 103609 57498 0/1 46087 1/1 24 1/2
Total Gene-associated SNVs 103609 57498 0/1 46087 1/1 24 1/2

Type Total Variants
42
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]16
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]21
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]11
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]2
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]61
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]9
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]21
NON_SYNONYMOUS_CODING10358
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION215
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS173
SPLICE_SITE_REGION31
SPLICE_SITE_REGION+SYNONYMOUS_CODING250
START_GAINED313
START_LOST11
STOP_GAINED96
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11350
SYNONYMOUS_STOP11
None0

Type Total Variants
787
MISSENSE10611
NONSENSE98
SILENT11611
None0

Type Total Variants
HIGH312
LOW12041
MODERATE10573
MODIFIER181
None0

Type Total Variants
PASS103609

Quality Value
Min30.31
Average553.900829948155
Max9053.77

Read Depth Value
Min1
Average25.200745109015624
Max346

Type Total Variants
None0
2|21
24
5|51

Chromossome Total Variants
110263
104708
116435
125484
132069
143446
153390
164510
176043
181666
196731
27303
202610
211502
222351
35749
44364
54483
64748
75724
83889
94450
M42
X1645
Y4