Name: galaxy7-vcffilter_3022nr8
Variants: 153889
Novel Variants: 28301 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 153889 96121 0/1 13 0/2 54488 1/1 3267 1/2
Total Gene-associated SNVs 153889 96121 0/1 13 0/2 54488 1/1 3267 1/2

Type Total Variants
40
CODON_CHANGE_PLUS_CODON_DELETION69
CODON_CHANGE_PLUS_CODON_INSERTION56
CODON_DELETION97
CODON_INSERTION74
FRAME_SHIFT186
FRAME_SHIFT+NON_SYNONYMOUS_CODING19
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING1
FRAME_SHIFT+STOP_LOST6
FRAME_SHIFT+SYNONYMOUS_CODING2
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF[MA0003.1:Ap2alpha]24
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]9
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]23
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]33
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]9
MOTIF[MA0079.2:SP1]36
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]5
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]16
MOTIF[MA0095.1:Yy1]17
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]11
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]131
MOTIF[MA0147.1:Cmyc]11
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]6
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]55
NON_SYNONYMOUS_CODING11864
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION3
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_INSERTION1
NON_SYNONYMOUS_CODING+CODON_INSERTION4
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION261
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS286
SPLICE_SITE_REGION36
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING273
START_GAINED333
START_LOST15
STOP_GAINED114
STOP_GAINED+SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12050
SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
SYNONYMOUS_CODING+CODON_DELETION2
SYNONYMOUS_STOP13
TRANSCRIPT5
None0

Type Total Variants
2367
MISSENSE11582
NONSENSE97
SILENT12279
None0

Type Total Variants
HIGH709
LOW12882
MODERATE12435
MODIFIER299
None0

Type Total Variants
.153889

Quality Value
Min20.0088
Average1746.42678401705
Max190310.0

Read Depth Value
Min11
Average112.84616834211673
Max11258

Type Total Variants
None0

Chromossome Total Variants
113632
107443
118370
127475
133042
144943
155211
167497
178782
183019
199942
211119
203463
212770
223283
38057
46198
56097
68297
77916
85165
96704
M40
X3299
Y2125