Name: galaxy6-vcffilter_3022nr4
Variants: 120168
Novel Variants: 18940 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| 38 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 68 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 56 |
| CODON_DELETION | 95 |
| CODON_INSERTION | 75 |
| FRAME_SHIFT | 165 |
| FRAME_SHIFT+NON_SYNONYMOUS_CODING | 17 |
| FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 42 |
| FRAME_SHIFT+START_LOST | 1 |
| FRAME_SHIFT+STOP_GAINED | 4 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING | 1 |
| FRAME_SHIFT+STOP_LOST | 5 |
| FRAME_SHIFT+SYNONYMOUS_CODING | 1 |
| GENE_FUSION | 1 |
| MOTIF_DELETED | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 19 |
| MOTIF[MA0014.1:Pax5] | 3 |
| MOTIF[MA0016.1:RXRA] | 3 |
| MOTIF[MA0024.1:E2F1] | 5 |
| MOTIF[MA0035.2:Gata1] | 2 |
| MOTIF[MA0036.1:Gata2] | 1 |
| MOTIF[MA0047.2:FOXA2] | 1 |
| MOTIF[MA0058.1:Max] | 16 |
| MOTIF[MA0059.1:Cmyc] | 4 |
| MOTIF[MA0062.1:Gabp] | 6 |
| MOTIF[MA0062.2:Gabp] | 24 |
| MOTIF[MA0065.1:PPARG] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0079.1:SP1] | 7 |
| MOTIF[MA0079.2:SP1] | 27 |
| MOTIF[MA0080.1:PU1] | 5 |
| MOTIF[MA0080.2:PU1] | 5 |
| MOTIF[MA0083.1:Srf] | 2 |
| MOTIF[MA0093.1:USF1] | 4 |
| MOTIF[MA0095.1:Yy1] | 9 |
| MOTIF[MA0099.1:Cfos] | 1 |
| MOTIF[MA0114.1:HNF4A] | 7 |
| MOTIF[MA0138.1:Nrsf] | 2 |
| MOTIF[MA0138.2:Nrsf] | 3 |
| MOTIF[MA0139.1:CTCF] | 102 |
| MOTIF[MA0147.1:Cmyc] | 6 |
| MOTIF[MA0148.1:FOXA1] | 2 |
| MOTIF[MA0154.1:EBF] | 4 |
| MOTIF[MA0162.1:Egr1] | 43 |
| NON_SYNONYMOUS_CODING | 10716 |
| NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION | 3 |
| NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| NON_SYNONYMOUS_CODING+CODON_DELETION | 3 |
| NON_SYNONYMOUS_CODING+CODON_INSERTION | 3 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 240 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 255 |
| SPLICE_SITE_REGION | 30 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 261 |
| START_GAINED | 284 |
| START_LOST | 16 |
| STOP_GAINED | 95 |
| STOP_LOST | 22 |
| STOP_LOST+SPLICE_SITE_REGION | 3 |
| SYNONYMOUS_CODING | 11168 |
| SYNONYMOUS_CODING+CODON_DELETION | 2 |
| SYNONYMOUS_STOP | 12 |
| TRANSCRIPT | 5 |
| None | 0 |
| Type | Total Variants |
|---|---|
| . | 120168 |
| Quality | Value |
|---|---|
| Min | 20.0032 |
| Average | 1183.88286656848 |
| Max | 83849.3 |
| Read Depth | Value |
|---|---|
| Min | 11 |
| Average | 73.10150788895547 |
| Max | 10016 |
| Type | Total Variants |
|---|---|
| None | 0 |