Name: galaxy6-vcffilter_3022nr4
Variants: 120168
Novel Variants: 18940 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 120168 69289 0/1 7 0/2 49175 1/1 1697 1/2
Total Gene-associated SNVs 120168 69289 0/1 7 0/2 49175 1/1 1697 1/2

Type Total Variants
38
CODON_CHANGE_PLUS_CODON_DELETION68
CODON_CHANGE_PLUS_CODON_INSERTION56
CODON_DELETION95
CODON_INSERTION75
FRAME_SHIFT165
FRAME_SHIFT+NON_SYNONYMOUS_CODING17
FRAME_SHIFT+NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED+SYNONYMOUS_CODING1
FRAME_SHIFT+STOP_LOST5
FRAME_SHIFT+SYNONYMOUS_CODING1
GENE_FUSION1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]19
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]16
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]24
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]27
MOTIF[MA0080.1:PU1]5
MOTIF[MA0080.2:PU1]5
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]9
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]102
MOTIF[MA0147.1:Cmyc]6
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]43
NON_SYNONYMOUS_CODING10716
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION3
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_INSERTION1
NON_SYNONYMOUS_CODING+CODON_DELETION3
NON_SYNONYMOUS_CODING+CODON_INSERTION3
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION240
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS255
SPLICE_SITE_REGION30
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING261
START_GAINED284
START_LOST16
STOP_GAINED95
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11168
SYNONYMOUS_CODING+CODON_DELETION2
SYNONYMOUS_STOP12
TRANSCRIPT5
None0

Type Total Variants
1967
MISSENSE10567
NONSENSE87
SILENT11392
None0

Type Total Variants
HIGH635
LOW11882
MODERATE11264
MODIFIER232
None0

Type Total Variants
.120168

Quality Value
Min20.0032
Average1183.88286656847
Max83849.3

Read Depth Value
Min11
Average73.10150788895547
Max10016

Type Total Variants
None0

Chromossome Total Variants
111415
105224
116898
126403
132437
143564
154191
165494
177001
182271
197966
28833
202369
211831
222764
36835
44895
55392
67229
75856
83853
94973
M38
X1478
Y958