Name: lfl38 snp
Variants: 102330
Novel Variants: 736 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 102330 60156 0/1 42162 1/1 12 1/2
Total Gene-associated SNVs 102330 60156 0/1 42162 1/1 12 1/2

Type Total Variants
21
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]8
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]14
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]23
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]11
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]66
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]26
NON_SYNONYMOUS_CODING10116
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION190
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS163
SPLICE_SITE_REGION35
SPLICE_SITE_REGION+SYNONYMOUS_CODING224
START_GAINED307
START_LOST11
STOP_GAINED97
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11312
SYNONYMOUS_STOP8
None0

Type Total Variants
746
MISSENSE10341
NONSENSE98
SILENT11544
None0

Type Total Variants
HIGH299
LOW11959
MODERATE10306
MODIFIER165
None0

Type Total Variants
PASS102330

Quality Value
Min30.29
Average603.237746312047
Max12782.8

Read Depth Value
Min1
Average27.869559269031566
Max359

Type Total Variants
None0
2|22
23
5|52

Chromossome Total Variants
19874
104787
116710
125548
132161
143511
153370
164372
175583
181638
196786
27265
202682
211464
222602
35754
44170
54372
64627
75454
83793
94315
M21
X1466
Y5