Name: 55101705103716_annotated
Variants: 205336
Novel Variants: 8298 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 153 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 97 |
| CODON_DELETION | 57 |
| CODON_INSERTION | 79 |
| FRAME_SHIFT | 199 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 45 |
| FRAME_SHIFT+START_LOST | 8 |
| FRAME_SHIFT+STOP_GAINED | 3 |
| FRAME_SHIFT+STOP_LOST | 4 |
| GENE_FUSION_REVERESE | 1 |
| MOTIF_DELETED | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 40 |
| MOTIF[MA0014.1:Pax5] | 4 |
| MOTIF[MA0016.1:RXRA] | 5 |
| MOTIF[MA0024.1:E2F1] | 11 |
| MOTIF[MA0035.1:Gata1] | 1 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0047.1:FOXA2] | 1 |
| MOTIF[MA0047.2:FOXA2] | 1 |
| MOTIF[MA0058.1:Max] | 21 |
| MOTIF[MA0059.1:Cmyc] | 6 |
| MOTIF[MA0062.1:Gabp] | 10 |
| MOTIF[MA0062.2:Gabp] | 39 |
| MOTIF[MA0065.2:PPARG] | 3 |
| MOTIF[MA0079.1:SP1] | 22 |
| MOTIF[MA0079.2:SP1] | 60 |
| MOTIF[MA0080.1:PU1] | 3 |
| MOTIF[MA0080.2:PU1] | 2 |
| MOTIF[MA0083.1:Srf] | 2 |
| MOTIF[MA0093.1:USF1] | 10 |
| MOTIF[MA0095.1:Yy1] | 14 |
| MOTIF[MA0099.1:Cfos] | 4 |
| MOTIF[MA0099.2:AP1] | 2 |
| MOTIF[MA0114.1:HNF4A] | 12 |
| MOTIF[MA0138.1:Nrsf] | 1 |
| MOTIF[MA0138.2:Nrsf] | 11 |
| MOTIF[MA0139.1:CTCF] | 125 |
| MOTIF[MA0140.1:Tal1] | 1 |
| MOTIF[MA0147.1:Cmyc] | 16 |
| MOTIF[MA0148.1:FOXA1] | 3 |
| MOTIF[MA0154.1:EBF] | 5 |
| MOTIF[MA0159.1:RXR] | 2 |
| MOTIF[MA0162.1:Egr1] | 81 |
| NON_SYNONYMOUS_CODING | 11993 |
| NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 231 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 249 |
| SPLICE_SITE_REGION | 61 |
| SPLICE_SITE_REGION+CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 244 |
| START_GAINED | 391 |
| START_LOST | 9 |
| START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| STOP_GAINED | 103 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 22 |
| STOP_LOST+SPLICE_SITE_REGION | 3 |
| SYNONYMOUS_CODING | 11979 |
| SYNONYMOUS_STOP | 13 |
| TRANSCRIPT | 6 |
| None | 0 |
| Type | Total Variants |
|---|---|
| end | 11 |
| end;idl;mq,nt | 2 |
| end,lc | 34 |
| end;mq,lc | 9 |
| end;mq,nt | 88 |
| end,nt | 1116 |
| end,rn | 76 |
| idl | 335 |
| idl;end | 22 |
| idl;end,lc | 4 |
| idl;end,nt | 224 |
| idl;end,rn | 12 |
| idl,lc | 93 |
| idl;mq | 1 |
| idl;mq,nt | 53 |
| idl;mq,rn | 3 |
| idl,nt | 5159 |
| idl,rn | 7818 |
| lc | 4622 |
| mq;end,nt | 5 |
| mq,lc | 19 |
| mq,nt | 790 |
| mq,rn | 3 |
| nt | 139910 |
| PASS | 26450 |
| rn | 11161 |
| sb | 133 |
| sb;end | 5 |
| sb;end,lc | 7 |
| sb;end;mq,lc | 1 |
| sb;end;mq,nt | 6 |
| sb;end,nt | 47 |
| sb;end,rn | 1 |
| sb;idl | 20 |
| sb;idl;end | 2 |
| sb;idl;end,nt | 12 |
| sb;idl,lc | 3 |
| sb;idl;mq,nt | 2 |
| sb;idl,nt | 321 |
| sb;idl,rn | 306 |
| sb,lc | 333 |
| sb;mq,lc | 2 |
| sb;mq,nt | 40 |
| sb;mq,rn | 1 |
| sb,nt | 5643 |
| sb,rn | 431 |
| Quality | Value |
|---|---|
| Min | 6.0 |
| Average | 94.3369355592784 |
| Max | 15675.0 |
| Read Depth | Value |
|---|---|
| Min | 2 |
| Average | 55.02572856196673 |
| Max | 4607 |
| Type | Total Variants |
|---|---|
| None | 0 |