Name: 013 final
Variants: 116163
Novel Variants: 1655 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 116163 74713 0/1 41000 1/1 450 1/2
Total Gene-associated SNVs 116163 74713 0/1 41000 1/1 450 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION159
CODON_CHANGE_PLUS_CODON_INSERTION98
CODON_DELETION56
CODON_INSERTION83
FRAME_SHIFT289
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]19
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]11
MOTIF[MA0059.1:Cmyc]6
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]26
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]15
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]72
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]6
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]25
NON_SYNONYMOUS_CODING12001
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION249
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS271
SPLICE_SITE_REGION37
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING269
START_GAINED271
START_LOST9
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED115
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING12327
SYNONYMOUS_STOP18
TRANSCRIPT1
None0

Type Total Variants
1572
MISSENSE12291
NONSENSE117
SILENT12614
None0

Type Total Variants
HIGH778
LOW13042
MODERATE12650
MODIFIER124
None0

Type Total Variants
MG_INDEL_Filter228
MG_SNP_Filter3948
PASS111987

Quality Value
Min30.74
Average1607.37545965656
Max96413.77

Read Depth Value
Min0
Average89.61483432762584
Max4247

Type Total Variants
None0

Chromossome Total Variants
111756
105091
117352
126098
132301
144268
154300
164894
176302
181907
197777
28324
203160
211633
222992
36168
44469
55172
65106
76353
83939
94794
X1949
Y58