Name: dxc01 snp
Variants: 40296
Novel Variants: 149 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 40296 24047 0/1 16238 1/1 11 1/2
Total Gene-associated SNVs 40296 24047 0/1 16238 1/1 11 1/2

Type Total Variants
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0058.1:Max]3
MOTIF[MA0062.2:Gabp]10
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]5
MOTIF[MA0080.1:PU1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]19
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]3
NON_SYNONYMOUS_CODING8189
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION140
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS129
SPLICE_SITE_REGION14
SPLICE_SITE_REGION+SYNONYMOUS_CODING167
START_GAINED152
START_LOST11
STOP_GAINED61
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST18
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING9133
SYNONYMOUS_STOP6
None0

Type Total Variants
357
MISSENSE8359
NONSENSE62
SILENT9306
None0

Type Total Variants
HIGH224
LOW9495
MODERATE8329
MODIFIER36
None0

Type Total Variants
PASS40296

Quality Value
Min30.74
Average626.598019406043
Max16341.77

Read Depth Value
Min2
Average35.827228509033155
Max493

Type Total Variants
None0
2|22
22

Chromossome Total Variants
13886
101801
113101
121978
13748
141373
151237
161836
172425
18647
192714
22818
201068
21574
22923
32123
41708
51692
61773
72236
81514
91630
X484
Y7