Name: dnn62 snp
Variants: 40885
Novel Variants: 93 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 40885 25196 0/1 15678 1/1 11 1/2
Total Gene-associated SNVs 40885 25196 0/1 15678 1/1 11 1/2

Type Total Variants
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]3
MOTIF[MA0062.2:Gabp]9
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.1:PU1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0139.1:CTCF]15
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]7
NON_SYNONYMOUS_CODING8377
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION141
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS125
SPLICE_SITE_REGION15
SPLICE_SITE_REGION+SYNONYMOUS_CODING163
START_GAINED144
START_LOST9
STOP_GAINED61
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST13
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING9327
SYNONYMOUS_STOP10
None0

Type Total Variants
348
MISSENSE8541
NONSENSE62
SILENT9500
None0

Type Total Variants
HIGH213
LOW9688
MODERATE8518
MODIFIER32
None0

Type Total Variants
PASS40885

Quality Value
Min30.77
Average610.818946067889
Max15447.77

Read Depth Value
Min1
Average35.511483429130486
Max455

Type Total Variants
None0
21

Chromossome Total Variants
13940
101817
113022
122066
13724
141465
151241
161693
172313
18693
192803
22846
201083
21528
22967
32227
41709
51807
61800
72222
81525
91675
X717
Y2