Name: k06401019-ib-ex-60-2014-fateme-pour-orion-raw-data-ilya-biotech_s3 soft_filtered
Variants: 29083
Novel Variants: 418 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 167 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 99 |
| CODON_DELETION | 65 |
| CODON_INSERTION | 82 |
| FRAME_SHIFT | 275 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 37 |
| FRAME_SHIFT+START_LOST | 4 |
| FRAME_SHIFT+STOP_GAINED | 4 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 2 |
| FRAME_SHIFT+STOP_LOST | 4 |
| MOTIF[MA0003.1:Ap2alpha] | 1 |
| MOTIF[MA0047.2:FOXA2] | 1 |
| MOTIF[MA0062.2:Gabp] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0095.1:Yy1] | 2 |
| MOTIF[MA0139.1:CTCF] | 1 |
| MOTIF[MA0162.1:Egr1] | 1 |
| NON_SYNONYMOUS_CODING | 11289 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 221 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 257 |
| SPLICE_SITE_REGION | 8 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 2 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 268 |
| SPLICE_SITE_REGION+SYNONYMOUS_STOP | 1 |
| START_GAINED | 29 |
| START_LOST | 7 |
| STOP_GAINED | 103 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_LOST | 18 |
| STOP_LOST+SPLICE_SITE_REGION | 3 |
| SYNONYMOUS_CODING | 11649 |
| SYNONYMOUS_STOP | 7 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 187 |
| basic_snp_filter | 1218 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 29 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 16 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 311 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 370 |
| PASS | 26952 |
| Quality | Value |
|---|---|
| Min | 30.48 |
| Average | 2243.1484018157 |
| Max | 55144.6 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 137.90922532063405 |
| Max | 3280 |
| Type | Total Variants |
|---|---|
| None | 0 |