Name: 2020-005022-full_variant_table
Variants: 44679
Novel Variants: 2453 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 44679 27795 0/1 16884 1/1
Total Gene-associated SNVs 44679 27795 0/1 16884 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION100
CODON_CHANGE_PLUS_CODON_INSERTION29
CODON_DELETION42
CODON_INSERTION30
FRAME_SHIFT54
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST1
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]6
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]6
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]24
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]12
NON_SYNONYMOUS_CODING4168
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION98
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS148
SPLICE_SITE_REGION6
SPLICE_SITE_REGION+SYNONYMOUS_CODING103
START_GAINED84
START_LOST4
STOP_GAINED34
STOP_GAINED+CODON_INSERTION1
STOP_LOST10
SYNONYMOUS_CODING5027
SYNONYMOUS_STOP3
TRANSCRIPT1
None0

Type Total Variants
602
MISSENSE4281
NONSENSE34
SILENT5133
None0

Type Total Variants
HIGH264
LOW5264
MODERATE4467
MODIFIER55
None0

Type Total Variants
homopolymer_region74
homopolymer_region;off_target175
low_coverage57
low_coverage;homopolymer_region;off_target1
low_coverage;low_variant_fraction;off_target2
low_coverage;off_target5843
low_variant_fraction985
low_variant_fraction;off_target860
off_target25349
PASS11333

Quality Value
Min101.0
Average2375.56167326932
Max10000.0

Read Depth Value
Min5
Average111.26907495691488
Max2590

Type Total Variants
None0

Chromossome Total Variants
14180
102263
112488
122432
131014
141347
151755
161832
172322
18863
192220
23274
20929
21609
221046
32658
41903
52079
63232
72079
81596
91850
X693
Y15