Name: 2020-005022-full_variant_table
Variants: 44679
Novel Variants: 2453 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 100 |
CODON_CHANGE_PLUS_CODON_INSERTION | 29 |
CODON_DELETION | 42 |
CODON_INSERTION | 30 |
FRAME_SHIFT | 54 |
FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
FRAME_SHIFT+START_LOST | 1 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_LOST | 1 |
MOTIF_DELETED | 2 |
MOTIF[MA0003.1:Ap2alpha] | 6 |
MOTIF[MA0014.1:Pax5] | 4 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 3 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0058.1:Max] | 5 |
MOTIF[MA0059.1:Cmyc] | 2 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0062.2:Gabp] | 6 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0065.2:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 3 |
MOTIF[MA0079.2:SP1] | 8 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0093.1:USF1] | 2 |
MOTIF[MA0095.1:Yy1] | 2 |
MOTIF[MA0099.1:Cfos] | 2 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0138.2:Nrsf] | 3 |
MOTIF[MA0139.1:CTCF] | 24 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 1 |
MOTIF[MA0162.1:Egr1] | 12 |
NON_SYNONYMOUS_CODING | 4168 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 98 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 148 |
SPLICE_SITE_REGION | 6 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 103 |
START_GAINED | 84 |
START_LOST | 4 |
STOP_GAINED | 34 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_LOST | 10 |
SYNONYMOUS_CODING | 5027 |
SYNONYMOUS_STOP | 3 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
homopolymer_region | 74 |
homopolymer_region;off_target | 175 |
low_coverage | 57 |
low_coverage;homopolymer_region;off_target | 1 |
low_coverage;low_variant_fraction;off_target | 2 |
low_coverage;off_target | 5843 |
low_variant_fraction | 985 |
low_variant_fraction;off_target | 860 |
off_target | 25349 |
PASS | 11333 |
Quality | Value |
---|---|
Min | 101.0 |
Average | 2375.56167326932 |
Max | 10000.0 |
Read Depth | Value |
---|---|
Min | 5 |
Average | 111.26907495691488 |
Max | 2590 |
Type | Total Variants |
---|---|
None | 0 |