Name: mn1_1_dkdn200006670-1a_hhwwtdsxy_filt_10x
Variants: 105382
Novel Variants: 1030 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 76 |
CODON_CHANGE_PLUS_CODON_INSERTION | 49 |
CODON_DELETION | 32 |
CODON_INSERTION | 47 |
FRAME_SHIFT | 121 |
FRAME_SHIFT+SPLICE_SITE_REGION | 35 |
FRAME_SHIFT+START_LOST | 3 |
FRAME_SHIFT+STOP_GAINED | 3 |
FRAME_SHIFT+STOP_LOST | 5 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 9 |
MOTIF[MA0014.1:Pax5] | 1 |
MOTIF[MA0016.1:RXRA] | 2 |
MOTIF[MA0024.1:E2F1] | 3 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0047.1:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 13 |
MOTIF[MA0059.1:Cmyc] | 3 |
MOTIF[MA0062.1:Gabp] | 3 |
MOTIF[MA0062.2:Gabp] | 16 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 6 |
MOTIF[MA0079.2:SP1] | 7 |
MOTIF[MA0080.2:PU1] | 2 |
MOTIF[MA0093.1:USF1] | 1 |
MOTIF[MA0095.1:Yy1] | 8 |
MOTIF[MA0099.1:Cfos] | 1 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0138.2:Nrsf] | 2 |
MOTIF[MA0139.1:CTCF] | 69 |
MOTIF[MA0147.1:Cmyc] | 6 |
MOTIF[MA0154.1:EBF] | 2 |
MOTIF[MA0162.1:Egr1] | 9 |
NON_SYNONYMOUS_CODING | 9930 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 217 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 7 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 227 |
SPLICE_SITE_REGION | 25 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 235 |
START_GAINED | 210 |
START_LOST | 14 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 93 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 19 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 10736 |
SYNONYMOUS_STOP | 13 |
None | 0 |
Type | Total Variants |
---|---|
PASS | 105382 |
Quality | Value |
---|---|
Min | 30.77 |
Average | 925.85076274872 |
Max | 21538.73 |
Read Depth | Value |
---|---|
Min | 9 |
Average | 44.241008900950824 |
Max | 250 |
Type | Total Variants |
---|---|
None | 0 |