Name: mn1_1_dkdn200006670-1a_hhwwtdsxy_filt_10x
Variants: 105382
Novel Variants: 1030 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 105382 64999 0/1 40070 1/1 313 1/2
Total Gene-associated SNVs 105382 64999 0/1 40070 1/1 313 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION76
CODON_CHANGE_PLUS_CODON_INSERTION49
CODON_DELETION32
CODON_INSERTION47
FRAME_SHIFT121
FRAME_SHIFT+SPLICE_SITE_REGION35
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST5
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]9
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]16
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]7
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]69
MOTIF[MA0147.1:Cmyc]6
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]9
NON_SYNONYMOUS_CODING9930
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION217
PROTEIN_PROTEIN_INTERACTION_LOCUS7
PROTEIN_STRUCTURAL_INTERACTION_LOCUS227
SPLICE_SITE_REGION25
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING235
START_GAINED210
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED93
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST19
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10736
SYNONYMOUS_STOP13
None0

Type Total Variants
1015
MISSENSE10183
NONSENSE94
SILENT10984
None0

Type Total Variants
HIGH532
LOW11290
MODERATE10355
MODIFIER99
None0

Type Total Variants
PASS105382

Quality Value
Min30.77
Average925.85076274865
Max21538.73

Read Depth Value
Min9
Average44.241008900950824
Max250

Type Total Variants
None0

Chromossome Total Variants
110182
104710
116542
125679
132148
143821
153467
164696
175501
181773
196270
27515
202806
211713
222576
35654
44318
54729
66618
75351
83773
94248
X1223
Y69