Name: 4k20002_01 gatk
Variants: 93825
Novel Variants: 1809 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 93825 55939 0/1 37520 1/1 366 1/2
Total Gene-associated SNVs 93825 55939 0/1 37520 1/1 366 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION149
CODON_CHANGE_PLUS_CODON_INSERTION101
CODON_DELETION56
CODON_INSERTION74
FRAME_SHIFT317
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED8
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
MOTIF_DELETED4
MOTIF[MA0003.1:Ap2alpha]10
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]24
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]5
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]45
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]24
NON_SYNONYMOUS_CODING11832
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION254
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS273
SPLICE_SITE_REGION33
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING263
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED241
START_LOST9
START_LOST+CODON_DELETION1
STOP_GAINED118
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11948
SYNONYMOUS_STOP12
TRANSCRIPT2
None0

Type Total Variants
1486
MISSENSE12122
NONSENSE121
SILENT12224
None0

Type Total Variants
HIGH813
LOW12581
MODERATE12471
MODIFIER88
None0

Type Total Variants
.93825

Quality Value
Min10.15
Average1001.14759946698
Max59641.77

Read Depth Value
Min0
Average50.73302424726885
Max1684

Type Total Variants
None0

Chromossome Total Variants
19782
104097
115595
125296
131604
142802
153335
164125
175349
181674
196439
26811
202074
211301
222228
35130
43700
53814
65674
74762
83016
93959
X1188
Y70