Name: lf7070
Variants: 97385
Novel Variants: 611 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 97385 55092 0/1 42293 1/1
Total Gene-associated SNVs 97385 55092 0/1 42293 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION99
CODON_CHANGE_PLUS_CODON_INSERTION66
CODON_DELETION31
CODON_INSERTION43
FRAME_SHIFT163
FRAME_SHIFT+SPLICE_SITE_REGION33
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_LOST2
FRAME_SHIFT+STOP_LOST+SPLICE_SITE_REGION1
MOTIF[MA0003.1:Ap2alpha]7
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0062.2:Gabp]10
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]9
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]56
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]9
NON_SYNONYMOUS_CODING10430
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION218
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS244
SPLICE_SITE_REGION26
SPLICE_SITE_REGION+CODON_DELETION3
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING238
START_GAINED187
START_LOST7
STOP_GAINED88
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11070
SYNONYMOUS_STOP11
None0

Type Total Variants
1055
MISSENSE10683
NONSENSE90
SILENT11319
None0

Type Total Variants
HIGH581
LOW11591
MODERATE10891
MODIFIER84
None0

Type Total Variants
FSFilter2002
FSFilter6027
FSFilter60;HaplotypeScoreFilter1315
FSFilter60;HaplotypeScoreFilter13;MQFilter405
FSFilter60;HaplotypeScoreFilter13;MQFilter40;QDFilter21
FSFilter60;HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster3
FSFilter60;HaplotypeScoreFilter13;QDFilter217
FSFilter60;HaplotypeScoreFilter13;SnpCluster1
FSFilter60;MQFilter4014
FSFilter60;MQFilter40;QDFilter27
FSFilter60;MQFilter40;SnpCluster3
FSFilter60;MQRankSumFilter12_51
FSFilter60;QDFilter235
FSFilter60;QDFilter2;SnpCluster3
FSFilter60;SnpCluster3
HaplotypeScoreFilter13434
HaplotypeScoreFilter13;MQFilter40215
HaplotypeScoreFilter13;MQFilter40;QDFilter2109
HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster32
HaplotypeScoreFilter13;MQFilter40;SnpCluster78
HaplotypeScoreFilter13;MQRankSumFilter12_51
HaplotypeScoreFilter13;QDFilter2162
HaplotypeScoreFilter13;QDFilter2;SnpCluster29
HaplotypeScoreFilter13;SnpCluster51
MQFilter404351
MQFilter40;QDFilter21024
MQFilter40;QDFilter2;SnpCluster22
MQFilter40;SnpCluster165
MQRankSumFilter12_53
PASS89273
QDFilter2997
QDFilter2;SnpCluster57
SnpCluster245

Quality Value
Min30.02
Average631.693807978642
Max19615.19

Read Depth Value
Min2
Average37.3903270524208
Max250

Type Total Variants
None0

Chromossome Total Variants
110039
104328
115978
125080
132002
143562
153532
163789
175264
181554
195972
27230
202439
211504
222237
35338
44115
54143
65493
75038
83344
93951
X1336
Y117