Name: lf7070
Variants: 97385
Novel Variants: 611 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 99 |
CODON_CHANGE_PLUS_CODON_INSERTION | 66 |
CODON_DELETION | 31 |
CODON_INSERTION | 43 |
FRAME_SHIFT | 163 |
FRAME_SHIFT+SPLICE_SITE_REGION | 33 |
FRAME_SHIFT+START_LOST | 2 |
FRAME_SHIFT+STOP_GAINED | 7 |
FRAME_SHIFT+STOP_LOST | 2 |
FRAME_SHIFT+STOP_LOST+SPLICE_SITE_REGION | 1 |
MOTIF[MA0003.1:Ap2alpha] | 7 |
MOTIF[MA0014.1:Pax5] | 5 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 3 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0047.1:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 7 |
MOTIF[MA0062.2:Gabp] | 10 |
MOTIF[MA0079.1:SP1] | 2 |
MOTIF[MA0079.2:SP1] | 9 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0093.1:USF1] | 6 |
MOTIF[MA0095.1:Yy1] | 6 |
MOTIF[MA0099.1:Cfos] | 1 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0138.2:Nrsf] | 7 |
MOTIF[MA0139.1:CTCF] | 56 |
MOTIF[MA0147.1:Cmyc] | 3 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 3 |
MOTIF[MA0162.1:Egr1] | 9 |
NON_SYNONYMOUS_CODING | 10430 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 218 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 244 |
SPLICE_SITE_REGION | 26 |
SPLICE_SITE_REGION+CODON_DELETION | 3 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 238 |
START_GAINED | 187 |
START_LOST | 7 |
STOP_GAINED | 88 |
STOP_GAINED+SPLICE_SITE_REGION | 2 |
STOP_LOST | 24 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 11070 |
SYNONYMOUS_STOP | 11 |
None | 0 |
Type | Total Variants |
---|---|
FSFilter200 | 2 |
FSFilter60 | 27 |
FSFilter60;HaplotypeScoreFilter13 | 15 |
FSFilter60;HaplotypeScoreFilter13;MQFilter40 | 5 |
FSFilter60;HaplotypeScoreFilter13;MQFilter40;QDFilter2 | 1 |
FSFilter60;HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster | 3 |
FSFilter60;HaplotypeScoreFilter13;QDFilter2 | 17 |
FSFilter60;HaplotypeScoreFilter13;SnpCluster | 1 |
FSFilter60;MQFilter40 | 14 |
FSFilter60;MQFilter40;QDFilter2 | 7 |
FSFilter60;MQFilter40;SnpCluster | 3 |
FSFilter60;MQRankSumFilter12_5 | 1 |
FSFilter60;QDFilter2 | 35 |
FSFilter60;QDFilter2;SnpCluster | 3 |
FSFilter60;SnpCluster | 3 |
HaplotypeScoreFilter13 | 434 |
HaplotypeScoreFilter13;MQFilter40 | 215 |
HaplotypeScoreFilter13;MQFilter40;QDFilter2 | 109 |
HaplotypeScoreFilter13;MQFilter40;QDFilter2;SnpCluster | 32 |
HaplotypeScoreFilter13;MQFilter40;SnpCluster | 78 |
HaplotypeScoreFilter13;MQRankSumFilter12_5 | 1 |
HaplotypeScoreFilter13;QDFilter2 | 162 |
HaplotypeScoreFilter13;QDFilter2;SnpCluster | 29 |
HaplotypeScoreFilter13;SnpCluster | 51 |
MQFilter40 | 4351 |
MQFilter40;QDFilter2 | 1024 |
MQFilter40;QDFilter2;SnpCluster | 22 |
MQFilter40;SnpCluster | 165 |
MQRankSumFilter12_5 | 3 |
PASS | 89273 |
QDFilter2 | 997 |
QDFilter2;SnpCluster | 57 |
SnpCluster | 245 |
Quality | Value |
---|---|
Min | 30.02 |
Average | 631.693807978642 |
Max | 19615.19 |
Read Depth | Value |
---|---|
Min | 2 |
Average | 37.3903270524208 |
Max | 250 |
Type | Total Variants |
---|---|
None | 0 |