Name: cypcyp_20170119
Variants: 66702
Novel Variants: 4944 (Not in latest DbSNP Build)
Type | Total Variants | |||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Total SNVs | 66702 | 41024 0/1 | 2545 0/2 | 653 0/3 | 223 0/4 | 100 0/5 | 41 0/6 | 20882 1/1 | 472 1/2 | 76 1/3 | 40 1/4 | 24 1/5 | 7 1/6 | 270 2/2 | 116 2/3 | 40 2/4 | 18 2/5 | 13 2/6 | 34 3/3 | 36 3/4 | 21 3/5 | 7 3/6 | 17 4/4 | 17 4/5 | 5 4/6 | 13 5/5 | 3 5/6 | 5 6/6 |
Total Gene-associated SNVs | 66702 | 41024 0/1 | 2545 0/2 | 653 0/3 | 223 0/4 | 100 0/5 | 41 0/6 | 20882 1/1 | 472 1/2 | 76 1/3 | 40 1/4 | 24 1/5 | 7 1/6 | 270 2/2 | 116 2/3 | 40 2/4 | 18 2/5 | 13 2/6 | 34 3/3 | 36 3/4 | 21 3/5 | 7 3/6 | 17 4/4 | 17 4/5 | 5 4/6 | 13 5/5 | 3 5/6 | 5 6/6 |
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 155 |
CODON_CHANGE_PLUS_CODON_INSERTION | 146 |
CODON_DELETION | 80 |
CODON_INSERTION | 156 |
EXON_DELETED | 1 |
FRAME_SHIFT | 752 |
FRAME_SHIFT+SPLICE_SITE_REGION | 52 |
FRAME_SHIFT+START_LOST | 3 |
FRAME_SHIFT+STOP_GAINED | 16 |
FRAME_SHIFT+STOP_LOST | 8 |
GENE_FUSION | 4 |
GENE_FUSION_REVERESE | 2 |
MOTIF_DELETED | 8 |
MOTIF[MA0003.1:Ap2alpha] | 5 |
MOTIF[MA0024.1:E2F1] | 3 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0047.1:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 11 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0062.2:Gabp] | 7 |
MOTIF[MA0079.2:SP1] | 10 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0095.1:Yy1] | 5 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0138.2:Nrsf] | 3 |
MOTIF[MA0139.1:CTCF] | 21 |
MOTIF[MA0147.1:Cmyc] | 11 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0162.1:Egr1] | 14 |
NON_SYNONYMOUS_CODING | 12210 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 262 |
NON_SYNONYMOUS_START | 3 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 241 |
SPLICE_SITE_REGION | 37 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+CODON_INSERTION | 2 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 264 |
START_GAINED | 153 |
START_LOST | 13 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 157 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 23 |
STOP_LOST+SPLICE_SITE_REGION | 5 |
SYNONYMOUS_CODING | 11986 |
SYNONYMOUS_STOP | 12 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
InbreedingCoeff | 5007 |
PASS | 55022 |
VQSRTrancheINDEL95.00to96.00 | 221 |
VQSRTrancheINDEL96.00to97.00 | 204 |
VQSRTrancheINDEL97.00to99.00 | 910 |
VQSRTrancheINDEL99.00to99.50 | 397 |
VQSRTrancheINDEL99.50to99.90 | 434 |
VQSRTrancheINDEL99.90to99.95 | 212 |
VQSRTrancheINDEL99.95to100.00 | 297 |
VQSRTrancheSNP99.60to99.80 | 1447 |
VQSRTrancheSNP99.80to99.90 | 1045 |
VQSRTrancheSNP99.90to99.95 | 620 |
VQSRTrancheSNP99.95to100.00 | 886 |
Quality | Value |
---|---|
Min | 37.86 |
Average | 17632456.4194813 |
Max | 431463000.0 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 0.0 |
Max | 0 |
Type | Total Variants |
---|---|
None | 0 |