Name: cypcyp_20170119
Variants: 66702
Novel Variants: 4944 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION155
CODON_CHANGE_PLUS_CODON_INSERTION146
CODON_DELETION80
CODON_INSERTION156
EXON_DELETED1
FRAME_SHIFT752
FRAME_SHIFT+SPLICE_SITE_REGION52
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED16
FRAME_SHIFT+STOP_LOST8
GENE_FUSION4
GENE_FUSION_REVERESE2
MOTIF_DELETED8
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]11
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]7
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]21
MOTIF[MA0147.1:Cmyc]11
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]14
NON_SYNONYMOUS_CODING12210
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION262
NON_SYNONYMOUS_START3
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS241
SPLICE_SITE_REGION37
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING264
START_GAINED153
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED157
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST23
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING11986
SYNONYMOUS_STOP12
TRANSCRIPT1
None0

Type Total Variants
1925
MISSENSE12516
NONSENSE158
SILENT12262
None0

Type Total Variants
HIGH1285
LOW12528
MODERATE13014
MODIFIER34
None0

Type Total Variants
InbreedingCoeff5007
PASS55022
VQSRTrancheINDEL95.00to96.00221
VQSRTrancheINDEL96.00to97.00204
VQSRTrancheINDEL97.00to99.00910
VQSRTrancheINDEL99.00to99.50397
VQSRTrancheINDEL99.50to99.90434
VQSRTrancheINDEL99.90to99.95212
VQSRTrancheINDEL99.95to100.00297
VQSRTrancheSNP99.60to99.801447
VQSRTrancheSNP99.80to99.901045
VQSRTrancheSNP99.90to99.95620
VQSRTrancheSNP99.95to100.00886

Quality Value
Min37.86
Average17632456.4194813
Max431463000.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
16710
102703
114248
123446
131135
142565
152288
162799
173829
181096
195063
24473
201505
21943
221608
33404
42648
52808
63841
73345
82379
92602
MT3
X1231
Y30