Name: i06401043-ib-ex-60-1962-parsa-riazi-ilya-biotech-100x-7d5-4_s155 soft_filtered
Variants: 28447
Novel Variants: 426 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 159 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 102 |
| CODON_DELETION | 65 |
| CODON_INSERTION | 92 |
| FRAME_SHIFT | 231 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 39 |
| FRAME_SHIFT+START_LOST | 7 |
| FRAME_SHIFT+STOP_GAINED | 3 |
| FRAME_SHIFT+STOP_LOST | 4 |
| MOTIF[MA0003.1:Ap2alpha] | 1 |
| MOTIF[MA0062.2:Gabp] | 2 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0095.1:Yy1] | 2 |
| MOTIF[MA0139.1:CTCF] | 4 |
| MOTIF[MA0147.1:Cmyc] | 1 |
| MOTIF[MA0162.1:Egr1] | 2 |
| NON_SYNONYMOUS_CODING | 10869 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 213 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 294 |
| SPLICE_SITE_REGION | 8 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 248 |
| SPLICE_SITE_REGION+SYNONYMOUS_STOP | 1 |
| START_GAINED | 28 |
| START_LOST | 10 |
| STOP_GAINED | 104 |
| STOP_LOST | 19 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 11477 |
| SYNONYMOUS_STOP | 9 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 209 |
| basic_snp_filter | 795 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 17 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 8 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 253 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 211 |
| PASS | 26954 |
| Quality | Value |
|---|---|
| Min | 30.6 |
| Average | 2125.5064558652 |
| Max | 59041.6 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 148.53021408232854 |
| Max | 2485 |
| Type | Total Variants |
|---|---|
| None | 0 |