Name: i06401043-ib-ex-60-1962-parsa-riazi-ilya-biotech-100x-7d5-4_s155 soft_filtered
Variants: 28447
Novel Variants: 426 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 28447 18498 0/1 9857 1/1 92 1/2
Total Gene-associated SNVs 28447 18498 0/1 9857 1/1 92 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION159
CODON_CHANGE_PLUS_CODON_INSERTION102
CODON_DELETION65
CODON_INSERTION92
FRAME_SHIFT231
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST7
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST4
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0062.2:Gabp]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0139.1:CTCF]4
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0162.1:Egr1]2
NON_SYNONYMOUS_CODING10869
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION213
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS294
SPLICE_SITE_REGION8
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING248
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED28
START_LOST10
STOP_GAINED104
STOP_LOST19
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING11477
SYNONYMOUS_STOP9
None0

Type Total Variants
1048
MISSENSE11113
NONSENSE104
SILENT11735
None0

Type Total Variants
HIGH713
LOW11778
MODERATE11502
MODIFIER7
None0

Type Total Variants
basic_indel_filter209
basic_snp_filter795
CNN_1D_INDEL_Tranche_99.40_100.0017
CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter8
CNN_1D_SNP_Tranche_99.95_100.00253
CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter211
PASS26954

Quality Value
Min30.6
Average2125.50645586523
Max59041.6

Read Depth Value
Min0
Average148.53021408232854
Max2485

Type Total Variants
None0

Chromossome Total Variants
12940
101165
112078
121353
13489
14866
15884
161171
171890
18431
192266
21829
20594
21368
22663
31570
41103
51196
61687
71451
8899
91061
X480
Y13