Name: i06401043-ib-ex-60-1962-parsa-riazi-ilya-biotech-100x-7d5-4_s155 soft_filtered
Variants: 28447
Novel Variants: 426 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 159 |
CODON_CHANGE_PLUS_CODON_INSERTION | 102 |
CODON_DELETION | 65 |
CODON_INSERTION | 92 |
FRAME_SHIFT | 231 |
FRAME_SHIFT+SPLICE_SITE_REGION | 39 |
FRAME_SHIFT+START_LOST | 7 |
FRAME_SHIFT+STOP_GAINED | 3 |
FRAME_SHIFT+STOP_LOST | 4 |
MOTIF[MA0003.1:Ap2alpha] | 1 |
MOTIF[MA0062.2:Gabp] | 2 |
MOTIF[MA0065.2:PPARG] | 1 |
MOTIF[MA0095.1:Yy1] | 2 |
MOTIF[MA0139.1:CTCF] | 4 |
MOTIF[MA0147.1:Cmyc] | 1 |
MOTIF[MA0162.1:Egr1] | 2 |
NON_SYNONYMOUS_CODING | 10869 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 213 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 294 |
SPLICE_SITE_REGION | 8 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 248 |
SPLICE_SITE_REGION+SYNONYMOUS_STOP | 1 |
START_GAINED | 28 |
START_LOST | 10 |
STOP_GAINED | 104 |
STOP_LOST | 19 |
STOP_LOST+SPLICE_SITE_REGION | 1 |
SYNONYMOUS_CODING | 11477 |
SYNONYMOUS_STOP | 9 |
None | 0 |
Type | Total Variants |
---|---|
basic_indel_filter | 209 |
basic_snp_filter | 795 |
CNN_1D_INDEL_Tranche_99.40_100.00 | 17 |
CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 8 |
CNN_1D_SNP_Tranche_99.95_100.00 | 253 |
CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 211 |
PASS | 26954 |
Quality | Value |
---|---|
Min | 30.6 |
Average | 2125.50645586523 |
Max | 59041.6 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 148.53021408232854 |
Max | 2485 |
Type | Total Variants |
---|---|
None | 0 |