Name: mother filtered_variants
Variants: 133167
Novel Variants: 2546 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION150
CODON_CHANGE_PLUS_CODON_INSERTION103
CODON_DELETION60
CODON_INSERTION85
FRAME_SHIFT341
FRAME_SHIFT+SPLICE_SITE_REGION44
FRAME_SHIFT+START_LOST6
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]22
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]16
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]30
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]27
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]10
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]12
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]93
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]11
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]34
NON_SYNONYMOUS_CODING12497
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION262
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS285
SPLICE_SITE_REGION65
SPLICE_SITE_REGION+CODON_DELETION3
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING267
START_GAINED350
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED123
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST36
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12234
SYNONYMOUS_STOP16
TRANSCRIPT4
None0

Type Total Variants
1836
MISSENSE12811
NONSENSE126
SILENT12517
None0

Type Total Variants
HIGH872
LOW13089
MODERATE13161
MODIFIER168
None0

Type Total Variants
INDEL_LowQualityDepth1449
INDEL_LowQualityDepth;LowQual294
INDEL_StrandBias1
LowQual116
LowQual;SnpCluster22
LowQual;SNP_LowQualityDepth150
LowQual;SNP_LowQualityDepth;SnpCluster89
LowQual;SNP_LowQualityDepth;SNP_MappingQuality113
LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster29
LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias4
LowQual;SNP_LowQualityDepth;SNP_StrandBias2
LowQual;SNP_LowQualityDepth;SNP_StrandBias;SnpCluster3
LowQual;SNP_MappingQuality46
LowQual;SNP_MappingQuality;SnpCluster8
LowQual;SNP_MappingQuality;SNP_StrandBias;SnpCluster1
PASS114724
SnpCluster7106
SNP_LowQualityDepth428
SNP_LowQualityDepth;SnpCluster678
SNP_LowQualityDepth;SNP_MappingQuality337
SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster179
SNP_LowQualityDepth;SNP_MappingQuality;SNP_ReadPosRankSumLow3
SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias23
SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias;SnpCluster4
SNP_LowQualityDepth;SNP_MQRankSumLow23
SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster52
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_MappingQuality4
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow2
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster4
SNP_LowQualityDepth;SNP_ReadPosRankSumLow5
SNP_LowQualityDepth;SNP_ReadPosRankSumLow;SnpCluster6
SNP_LowQualityDepth;SNP_StrandBias43
SNP_LowQualityDepth;SNP_StrandBias;SnpCluster48
SNP_MappingQuality4057
SNP_MappingQuality;SnpCluster1297
SNP_MappingQuality;SNP_ReadPosRankSumLow1
SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster8
SNP_MappingQuality;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster2
SNP_MappingQuality;SNP_StrandBias195
SNP_MappingQuality;SNP_StrandBias;SnpCluster63
SNP_MQRankSumLow524
SNP_MQRankSumLow;SnpCluster604
SNP_MQRankSumLow;SNP_MappingQuality30
SNP_MQRankSumLow;SNP_MappingQuality;SnpCluster3
SNP_MQRankSumLow;SNP_MappingQuality;SNP_ReadPosRankSumLow;SNP_StrandBias1
SNP_MQRankSumLow;SNP_MappingQuality;SNP_StrandBias6
SNP_MQRankSumLow;SNP_ReadPosRankSumLow3
SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster4
SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster1
SNP_MQRankSumLow;SNP_StrandBias42
SNP_MQRankSumLow;SNP_StrandBias;SnpCluster51
SNP_ReadPosRankSumLow7
SNP_ReadPosRankSumLow;SnpCluster15
SNP_ReadPosRankSumLow;SNP_StrandBias1
SNP_StrandBias106
SNP_StrandBias;SnpCluster150

Quality Value
Min10.06
Average4172.30189634019
Max180835.9

Read Depth Value
Min0
Average63.46525790924178
Max1929

Type Total Variants
None0

Chromossome Total Variants
113121
105543
117905
126833
132405
144402
154727
165821
177456
182293
199120
29477
203241
212051
223893
37092
45160
55331
67418
76981
84365
95797
MT10
X2426
Y299