Name: mother filtered_variants
Variants: 133167
Novel Variants: 2546 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 150 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 103 |
| CODON_DELETION | 60 |
| CODON_INSERTION | 85 |
| FRAME_SHIFT | 341 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 44 |
| FRAME_SHIFT+START_LOST | 6 |
| FRAME_SHIFT+STOP_GAINED | 7 |
| FRAME_SHIFT+STOP_LOST | 5 |
| GENE_FUSION | 1 |
| GENE_FUSION_REVERESE | 2 |
| MOTIF_DELETED | 7 |
| MOTIF[MA0003.1:Ap2alpha] | 22 |
| MOTIF[MA0014.1:Pax5] | 4 |
| MOTIF[MA0016.1:RXRA] | 3 |
| MOTIF[MA0024.1:E2F1] | 5 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 2 |
| MOTIF[MA0058.1:Max] | 16 |
| MOTIF[MA0059.1:Cmyc] | 4 |
| MOTIF[MA0062.1:Gabp] | 6 |
| MOTIF[MA0062.2:Gabp] | 30 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0079.1:SP1] | 7 |
| MOTIF[MA0079.2:SP1] | 27 |
| MOTIF[MA0080.1:PU1] | 2 |
| MOTIF[MA0080.2:PU1] | 10 |
| MOTIF[MA0093.1:USF1] | 2 |
| MOTIF[MA0095.1:Yy1] | 8 |
| MOTIF[MA0099.2:AP1] | 1 |
| MOTIF[MA0114.1:HNF4A] | 12 |
| MOTIF[MA0138.1:Nrsf] | 1 |
| MOTIF[MA0138.2:Nrsf] | 7 |
| MOTIF[MA0139.1:CTCF] | 93 |
| MOTIF[MA0140.1:Tal1] | 2 |
| MOTIF[MA0147.1:Cmyc] | 11 |
| MOTIF[MA0154.1:EBF] | 3 |
| MOTIF[MA0162.1:Egr1] | 34 |
| NON_SYNONYMOUS_CODING | 12497 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 262 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 285 |
| SPLICE_SITE_REGION | 65 |
| SPLICE_SITE_REGION+CODON_DELETION | 3 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 267 |
| START_GAINED | 350 |
| START_LOST | 13 |
| START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| STOP_GAINED | 123 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 3 |
| STOP_LOST | 36 |
| STOP_LOST+SPLICE_SITE_REGION | 3 |
| SYNONYMOUS_CODING | 12234 |
| SYNONYMOUS_STOP | 16 |
| TRANSCRIPT | 4 |
| None | 0 |
| Type | Total Variants |
|---|---|
| INDEL_LowQualityDepth | 1449 |
| INDEL_LowQualityDepth;LowQual | 294 |
| INDEL_StrandBias | 1 |
| LowQual | 116 |
| LowQual;SnpCluster | 22 |
| LowQual;SNP_LowQualityDepth | 150 |
| LowQual;SNP_LowQualityDepth;SnpCluster | 89 |
| LowQual;SNP_LowQualityDepth;SNP_MappingQuality | 113 |
| LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster | 29 |
| LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias | 4 |
| LowQual;SNP_LowQualityDepth;SNP_StrandBias | 2 |
| LowQual;SNP_LowQualityDepth;SNP_StrandBias;SnpCluster | 3 |
| LowQual;SNP_MappingQuality | 46 |
| LowQual;SNP_MappingQuality;SnpCluster | 8 |
| LowQual;SNP_MappingQuality;SNP_StrandBias;SnpCluster | 1 |
| PASS | 114724 |
| SnpCluster | 7106 |
| SNP_LowQualityDepth | 428 |
| SNP_LowQualityDepth;SnpCluster | 678 |
| SNP_LowQualityDepth;SNP_MappingQuality | 337 |
| SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster | 179 |
| SNP_LowQualityDepth;SNP_MappingQuality;SNP_ReadPosRankSumLow | 3 |
| SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias | 23 |
| SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias;SnpCluster | 4 |
| SNP_LowQualityDepth;SNP_MQRankSumLow | 23 |
| SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster | 52 |
| SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_MappingQuality | 4 |
| SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow | 2 |
| SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster | 4 |
| SNP_LowQualityDepth;SNP_ReadPosRankSumLow | 5 |
| SNP_LowQualityDepth;SNP_ReadPosRankSumLow;SnpCluster | 6 |
| SNP_LowQualityDepth;SNP_StrandBias | 43 |
| SNP_LowQualityDepth;SNP_StrandBias;SnpCluster | 48 |
| SNP_MappingQuality | 4057 |
| SNP_MappingQuality;SnpCluster | 1297 |
| SNP_MappingQuality;SNP_ReadPosRankSumLow | 1 |
| SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster | 8 |
| SNP_MappingQuality;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster | 2 |
| SNP_MappingQuality;SNP_StrandBias | 195 |
| SNP_MappingQuality;SNP_StrandBias;SnpCluster | 63 |
| SNP_MQRankSumLow | 524 |
| SNP_MQRankSumLow;SnpCluster | 604 |
| SNP_MQRankSumLow;SNP_MappingQuality | 30 |
| SNP_MQRankSumLow;SNP_MappingQuality;SnpCluster | 3 |
| SNP_MQRankSumLow;SNP_MappingQuality;SNP_ReadPosRankSumLow;SNP_StrandBias | 1 |
| SNP_MQRankSumLow;SNP_MappingQuality;SNP_StrandBias | 6 |
| SNP_MQRankSumLow;SNP_ReadPosRankSumLow | 3 |
| SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster | 4 |
| SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster | 1 |
| SNP_MQRankSumLow;SNP_StrandBias | 42 |
| SNP_MQRankSumLow;SNP_StrandBias;SnpCluster | 51 |
| SNP_ReadPosRankSumLow | 7 |
| SNP_ReadPosRankSumLow;SnpCluster | 15 |
| SNP_ReadPosRankSumLow;SNP_StrandBias | 1 |
| SNP_StrandBias | 106 |
| SNP_StrandBias;SnpCluster | 150 |
| Quality | Value |
|---|---|
| Min | 10.06 |
| Average | 4172.30189633998 |
| Max | 180835.9 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 63.46525790924178 |
| Max | 1929 |
| Type | Total Variants |
|---|---|
| None | 0 |