Name: father filtered_variants
Variants: 131914
Novel Variants: 2573 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION153
CODON_CHANGE_PLUS_CODON_INSERTION110
CODON_DELETION55
CODON_INSERTION85
FRAME_SHIFT351
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]22
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0036.1:Gata2]3
MOTIF[MA0058.1:Max]14
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]31
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]8
MOTIF[MA0079.2:SP1]28
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]88
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]39
NON_SYNONYMOUS_CODING12351
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION265
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS270
SPLICE_SITE_REGION61
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING257
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED342
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED137
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST19
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12156
SYNONYMOUS_STOP12
TRANSCRIPT5
None0

Type Total Variants
1814
MISSENSE12650
NONSENSE139
SILENT12426
None0

Type Total Variants
HIGH859
LOW12982
MODERATE13022
MODIFIER166
None0

Type Total Variants
INDEL_LowQualityDepth1380
INDEL_LowQualityDepth;LowQual290
INDEL_ReadPosRankSumLow1
INDEL_StrandBias1
LowQual112
LowQual;SnpCluster35
LowQual;SNP_LowQualityDepth148
LowQual;SNP_LowQualityDepth;SnpCluster105
LowQual;SNP_LowQualityDepth;SNP_MappingQuality73
LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster25
LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias3
LowQual;SNP_LowQualityDepth;SNP_StrandBias4
LowQual;SNP_MappingQuality47
LowQual;SNP_MappingQuality;SnpCluster17
PASS113603
SnpCluster7254
SNP_LowQualityDepth412
SNP_LowQualityDepth;SnpCluster765
SNP_LowQualityDepth;SNP_MappingQuality313
SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster154
SNP_LowQualityDepth;SNP_MappingQuality;SNP_ReadPosRankSumLow1
SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias22
SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias;SnpCluster9
SNP_LowQualityDepth;SNP_MQRankSumLow19
SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster55
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_MappingQuality2
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow2
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster5
SNP_LowQualityDepth;SNP_ReadPosRankSumLow4
SNP_LowQualityDepth;SNP_ReadPosRankSumLow;SnpCluster6
SNP_LowQualityDepth;SNP_StrandBias37
SNP_LowQualityDepth;SNP_StrandBias;SnpCluster39
SNP_MappingQuality3932
SNP_MappingQuality;SnpCluster1270
SNP_MappingQuality;SNP_ReadPosRankSumLow2
SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster8
SNP_MappingQuality;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster2
SNP_MappingQuality;SNP_StrandBias190
SNP_MappingQuality;SNP_StrandBias;SnpCluster67
SNP_MQRankSumLow482
SNP_MQRankSumLow;SnpCluster598
SNP_MQRankSumLow;SNP_MappingQuality29
SNP_MQRankSumLow;SNP_MappingQuality;SnpCluster3
SNP_MQRankSumLow;SNP_MappingQuality;SNP_StrandBias5
SNP_MQRankSumLow;SNP_ReadPosRankSumLow3
SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster6
SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster1
SNP_MQRankSumLow;SNP_StrandBias38
SNP_MQRankSumLow;SNP_StrandBias;SnpCluster55
SNP_ReadPosRankSumLow9
SNP_ReadPosRankSumLow;SnpCluster16
SNP_ReadPosRankSumLow;SNP_StrandBias1
SNP_StrandBias105
SNP_StrandBias;SnpCluster149

Quality Value
Min10.1
Average4180.167115317
Max180835.9

Read Depth Value
Min0
Average60.05801507042467
Max2128

Type Total Variants
None0

Chromossome Total Variants
113061
105398
117628
127029
132522
144351
154532
166308
177168
182264
199111
29460
203239
212111
223416
37263
45231
55340
67000
77057
84526
95725
MT9
X1892
Y273