Name: father filtered_variants
Variants: 131914
Novel Variants: 2573 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 153 |
CODON_CHANGE_PLUS_CODON_INSERTION | 110 |
CODON_DELETION | 55 |
CODON_INSERTION | 85 |
FRAME_SHIFT | 351 |
FRAME_SHIFT+SPLICE_SITE_REGION | 45 |
FRAME_SHIFT+START_LOST | 4 |
FRAME_SHIFT+STOP_GAINED | 3 |
FRAME_SHIFT+STOP_LOST | 3 |
GENE_FUSION | 1 |
GENE_FUSION_REVERESE | 2 |
MOTIF_DELETED | 7 |
MOTIF[MA0003.1:Ap2alpha] | 22 |
MOTIF[MA0014.1:Pax5] | 7 |
MOTIF[MA0016.1:RXRA] | 2 |
MOTIF[MA0024.1:E2F1] | 5 |
MOTIF[MA0036.1:Gata2] | 3 |
MOTIF[MA0058.1:Max] | 14 |
MOTIF[MA0059.1:Cmyc] | 5 |
MOTIF[MA0062.1:Gabp] | 6 |
MOTIF[MA0062.2:Gabp] | 31 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 8 |
MOTIF[MA0079.2:SP1] | 28 |
MOTIF[MA0080.2:PU1] | 4 |
MOTIF[MA0093.1:USF1] | 4 |
MOTIF[MA0095.1:Yy1] | 11 |
MOTIF[MA0099.1:Cfos] | 1 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0114.1:HNF4A] | 8 |
MOTIF[MA0115.1:RNR1H2] | 1 |
MOTIF[MA0138.1:Nrsf] | 1 |
MOTIF[MA0138.2:Nrsf] | 3 |
MOTIF[MA0139.1:CTCF] | 88 |
MOTIF[MA0140.1:Tal1] | 2 |
MOTIF[MA0147.1:Cmyc] | 7 |
MOTIF[MA0154.1:EBF] | 4 |
MOTIF[MA0162.1:Egr1] | 39 |
NON_SYNONYMOUS_CODING | 12351 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 265 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 270 |
SPLICE_SITE_REGION | 61 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 257 |
SPLICE_SITE_REGION+SYNONYMOUS_STOP | 1 |
START_GAINED | 342 |
START_LOST | 11 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 137 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 2 |
STOP_LOST | 19 |
STOP_LOST+SPLICE_SITE_REGION | 4 |
SYNONYMOUS_CODING | 12156 |
SYNONYMOUS_STOP | 12 |
TRANSCRIPT | 5 |
None | 0 |
Type | Total Variants |
---|---|
INDEL_LowQualityDepth | 1380 |
INDEL_LowQualityDepth;LowQual | 290 |
INDEL_ReadPosRankSumLow | 1 |
INDEL_StrandBias | 1 |
LowQual | 112 |
LowQual;SnpCluster | 35 |
LowQual;SNP_LowQualityDepth | 148 |
LowQual;SNP_LowQualityDepth;SnpCluster | 105 |
LowQual;SNP_LowQualityDepth;SNP_MappingQuality | 73 |
LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster | 25 |
LowQual;SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias | 3 |
LowQual;SNP_LowQualityDepth;SNP_StrandBias | 4 |
LowQual;SNP_MappingQuality | 47 |
LowQual;SNP_MappingQuality;SnpCluster | 17 |
PASS | 113603 |
SnpCluster | 7254 |
SNP_LowQualityDepth | 412 |
SNP_LowQualityDepth;SnpCluster | 765 |
SNP_LowQualityDepth;SNP_MappingQuality | 313 |
SNP_LowQualityDepth;SNP_MappingQuality;SnpCluster | 154 |
SNP_LowQualityDepth;SNP_MappingQuality;SNP_ReadPosRankSumLow | 1 |
SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias | 22 |
SNP_LowQualityDepth;SNP_MappingQuality;SNP_StrandBias;SnpCluster | 9 |
SNP_LowQualityDepth;SNP_MQRankSumLow | 19 |
SNP_LowQualityDepth;SNP_MQRankSumLow;SnpCluster | 55 |
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_MappingQuality | 2 |
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow | 2 |
SNP_LowQualityDepth;SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster | 5 |
SNP_LowQualityDepth;SNP_ReadPosRankSumLow | 4 |
SNP_LowQualityDepth;SNP_ReadPosRankSumLow;SnpCluster | 6 |
SNP_LowQualityDepth;SNP_StrandBias | 37 |
SNP_LowQualityDepth;SNP_StrandBias;SnpCluster | 39 |
SNP_MappingQuality | 3932 |
SNP_MappingQuality;SnpCluster | 1270 |
SNP_MappingQuality;SNP_ReadPosRankSumLow | 2 |
SNP_MappingQuality;SNP_ReadPosRankSumLow;SnpCluster | 8 |
SNP_MappingQuality;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster | 2 |
SNP_MappingQuality;SNP_StrandBias | 190 |
SNP_MappingQuality;SNP_StrandBias;SnpCluster | 67 |
SNP_MQRankSumLow | 482 |
SNP_MQRankSumLow;SnpCluster | 598 |
SNP_MQRankSumLow;SNP_MappingQuality | 29 |
SNP_MQRankSumLow;SNP_MappingQuality;SnpCluster | 3 |
SNP_MQRankSumLow;SNP_MappingQuality;SNP_StrandBias | 5 |
SNP_MQRankSumLow;SNP_ReadPosRankSumLow | 3 |
SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SnpCluster | 6 |
SNP_MQRankSumLow;SNP_ReadPosRankSumLow;SNP_StrandBias;SnpCluster | 1 |
SNP_MQRankSumLow;SNP_StrandBias | 38 |
SNP_MQRankSumLow;SNP_StrandBias;SnpCluster | 55 |
SNP_ReadPosRankSumLow | 9 |
SNP_ReadPosRankSumLow;SnpCluster | 16 |
SNP_ReadPosRankSumLow;SNP_StrandBias | 1 |
SNP_StrandBias | 105 |
SNP_StrandBias;SnpCluster | 149 |
Quality | Value |
---|---|
Min | 10.1 |
Average | 4180.16711531678 |
Max | 180835.9 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 60.05801507042467 |
Max | 2128 |
Type | Total Variants |
---|---|
None | 0 |