Name: i06400152-ib-ex-60-1844-ehsan-ilya-biotech-orion-raw-data-9-ilya-biotech-4_s237 soft_filtered
Variants: 28230
Novel Variants: 407 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 145 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 105 |
| CODON_DELETION | 60 |
| CODON_INSERTION | 83 |
| FRAME_SHIFT | 245 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 36 |
| FRAME_SHIFT+START_LOST | 5 |
| FRAME_SHIFT+STOP_GAINED | 4 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_LOST | 3 |
| MOTIF[MA0003.1:Ap2alpha] | 1 |
| MOTIF[MA0062.2:Gabp] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0079.2:SP1] | 2 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0095.1:Yy1] | 3 |
| MOTIF[MA0139.1:CTCF] | 2 |
| MOTIF[MA0162.1:Egr1] | 2 |
| NON_SYNONYMOUS_CODING | 10787 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 218 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 281 |
| SPLICE_SITE_REGION | 6 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 245 |
| SPLICE_SITE_REGION+SYNONYMOUS_STOP | 1 |
| START_GAINED | 27 |
| START_LOST | 10 |
| STOP_GAINED | 88 |
| STOP_GAINED+CODON_INSERTION | 2 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 18 |
| STOP_LOST+SPLICE_SITE_REGION | 4 |
| SYNONYMOUS_CODING | 11430 |
| SYNONYMOUS_STOP | 10 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 225 |
| basic_snp_filter | 1190 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 28 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 6 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 300 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 474 |
| PASS | 26007 |
| Quality | Value |
|---|---|
| Min | 30.6 |
| Average | 2795.66101735772 |
| Max | 95835.6 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 164.14194119730783 |
| Max | 3281 |
| Type | Total Variants |
|---|---|
| None | 0 |