Name: 56001801068832b_wgz indel
Variants: 825517
Novel Variants: 85966 (Not in latest DbSNP Build)
Type | Total Variants | |||
---|---|---|---|---|
Total SNVs | 825517 | 496972 0/1 | 291604 1/1 | 36941 1/2 |
Total Gene-associated SNVs | 825517 | 496972 0/1 | 291604 1/1 | 36941 1/2 |
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 130 |
CODON_CHANGE_PLUS_CODON_INSERTION | 86 |
CODON_DELETION | 56 |
CODON_INSERTION | 58 |
FRAME_SHIFT | 245 |
FRAME_SHIFT+SPLICE_SITE_REGION | 41 |
FRAME_SHIFT+START_LOST | 4 |
FRAME_SHIFT+STOP_GAINED | 3 |
FRAME_SHIFT+STOP_LOST | 2 |
GENE_FUSION | 1 |
GENE_FUSION_REVERESE | 1 |
MOTIF_DELETED | 36 |
MOTIF[MA0003.1:Ap2alpha] | 28 |
MOTIF[MA0014.1:Pax5] | 2 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 6 |
MOTIF[MA0035.2:Gata1] | 3 |
MOTIF[MA0047.1:FOXA2] | 3 |
MOTIF[MA0047.2:FOXA2] | 2 |
MOTIF[MA0058.1:Max] | 25 |
MOTIF[MA0059.1:Cmyc] | 4 |
MOTIF[MA0062.1:Gabp] | 5 |
MOTIF[MA0062.2:Gabp] | 24 |
MOTIF[MA0065.1:PPARG] | 3 |
MOTIF[MA0074.1:RXRA] | 1 |
MOTIF[MA0079.1:SP1] | 25 |
MOTIF[MA0079.2:SP1] | 79 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 14 |
MOTIF[MA0093.1:USF1] | 9 |
MOTIF[MA0095.1:Yy1] | 5 |
MOTIF[MA0099.1:Cfos] | 5 |
MOTIF[MA0099.2:AP1] | 5 |
MOTIF[MA0105.1:NFKB] | 1 |
MOTIF[MA0114.1:HNF4A] | 14 |
MOTIF[MA0138.2:Nrsf] | 9 |
MOTIF[MA0139.1:CTCF] | 78 |
MOTIF[MA0140.1:Tal1] | 2 |
MOTIF[MA0147.1:Cmyc] | 11 |
MOTIF[MA0148.1:FOXA1] | 7 |
MOTIF[MA0154.1:EBF] | 10 |
MOTIF[MA0159.1:RXR] | 1 |
MOTIF[MA0162.1:Egr1] | 75 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 1 |
SPLICE_SITE_REGION | 46 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
TRANSCRIPT | 8 |
None | 0 |
Type | Total Variants |
---|---|
PASS | 825517 |
Quality | Value |
---|---|
Min | 10.15 |
Average | 416.237617177858 |
Max | 3522.73 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 20.590513581186094 |
Max | 79 |
Type | Total Variants |
---|---|
None | 0 |