Name: f06400088-ib-ex-60-1639-mahdi-papolzaee-x_s46 soft_filtered
Variants: 27258
Novel Variants: 308 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 153 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 92 |
| CODON_DELETION | 49 |
| CODON_INSERTION | 70 |
| FRAME_SHIFT | 219 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 35 |
| FRAME_SHIFT+START_LOST | 5 |
| FRAME_SHIFT+STOP_GAINED | 5 |
| FRAME_SHIFT+STOP_LOST | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0095.1:Yy1] | 2 |
| MOTIF[MA0139.1:CTCF] | 1 |
| MOTIF[MA0162.1:Egr1] | 1 |
| NON_SYNONYMOUS_CODING | 10518 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 193 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 247 |
| SPLICE_SITE_REGION | 8 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 238 |
| START_GAINED | 26 |
| START_LOST | 10 |
| STOP_GAINED | 86 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 16 |
| STOP_LOST+SPLICE_SITE_REGION | 3 |
| SYNONYMOUS_CODING | 11156 |
| SYNONYMOUS_STOP | 8 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 100 |
| basic_snp_filter | 1085 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 7 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 3 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 82 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 74 |
| PASS | 25907 |
| Quality | Value |
|---|---|
| Min | 30.6 |
| Average | 1690.56116442868 |
| Max | 23254.6 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 94.88935358426883 |
| Max | 1466 |
| Type | Total Variants |
|---|---|
| None | 0 |