Name: g06400842-ib-ex-60-1791_s19 soft_filtered
Variants: 27517
Novel Variants: 424 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 169 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 108 |
| CODON_DELETION | 67 |
| CODON_INSERTION | 81 |
| FRAME_SHIFT | 267 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 41 |
| FRAME_SHIFT+START_LOST | 6 |
| FRAME_SHIFT+STOP_GAINED | 3 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_LOST | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 2 |
| MOTIF[MA0062.2:Gabp] | 1 |
| MOTIF[MA0095.1:Yy1] | 2 |
| MOTIF[MA0139.1:CTCF] | 2 |
| MOTIF[MA0162.1:Egr1] | 2 |
| NON_SYNONYMOUS_CODING | 10644 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 195 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 6 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 252 |
| SPLICE_SITE_REGION | 4 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 240 |
| START_GAINED | 27 |
| START_LOST | 10 |
| START_LOST+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| STOP_GAINED | 107 |
| STOP_GAINED+CODON_INSERTION | 2 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 17 |
| STOP_LOST+SPLICE_SITE_REGION | 4 |
| SYNONYMOUS_CODING | 11169 |
| SYNONYMOUS_STOP | 6 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 73 |
| basic_snp_filter | 923 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 23 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 11 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 213 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 220 |
| PASS | 26054 |
| Quality | Value |
|---|---|
| Min | 30.6 |
| Average | 1768.12351419135 |
| Max | 88315.6 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 111.9828833085002 |
| Max | 3277 |
| Type | Total Variants |
|---|---|
| None | 0 |