Name: h06400082-ib-ex-60-1795_s23 soft_filtered
Variants: 28382
Novel Variants: 423 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 149 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 101 |
| CODON_DELETION | 60 |
| CODON_INSERTION | 85 |
| FRAME_SHIFT | 271 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 37 |
| FRAME_SHIFT+START_LOST | 4 |
| FRAME_SHIFT+STOP_GAINED | 7 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_LOST | 4 |
| MOTIF[MA0003.1:Ap2alpha] | 1 |
| MOTIF[MA0062.2:Gabp] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0095.1:Yy1] | 2 |
| MOTIF[MA0099.1:Cfos] | 1 |
| MOTIF[MA0139.1:CTCF] | 1 |
| MOTIF[MA0162.1:Egr1] | 1 |
| NON_SYNONYMOUS_CODING | 10979 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 207 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 291 |
| SPLICE_SITE_REGION | 4 |
| SPLICE_SITE_REGION+CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 242 |
| START_GAINED | 20 |
| START_LOST | 7 |
| STOP_GAINED | 88 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 2 |
| STOP_LOST | 15 |
| STOP_LOST+SPLICE_SITE_REGION | 5 |
| SYNONYMOUS_CODING | 11613 |
| SYNONYMOUS_STOP | 9 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 75 |
| basic_snp_filter | 939 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 28 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 11 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 297 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 307 |
| PASS | 26725 |
| Quality | Value |
|---|---|
| Min | 30.6 |
| Average | 1914.99137622451 |
| Max | 102881.6 |
| Read Depth | Value |
|---|---|
| Min | 2 |
| Average | 129.08907053766472 |
| Max | 3966 |
| Type | Total Variants |
|---|---|
| None | 0 |