Name: g06400841-ib-ex-60-1790-lia-amanlo-x_s18 soft_filtered
Variants: 28662
Novel Variants: 361 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 155 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 109 |
| CODON_DELETION | 64 |
| CODON_INSERTION | 85 |
| FRAME_SHIFT | 229 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 39 |
| FRAME_SHIFT+START_LOST | 3 |
| FRAME_SHIFT+STOP_GAINED | 1 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_LOST | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 1 |
| MOTIF[MA0047.2:FOXA2] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0079.2:SP1] | 1 |
| MOTIF[MA0095.1:Yy1] | 2 |
| MOTIF[MA0139.1:CTCF] | 2 |
| MOTIF[MA0162.1:Egr1] | 2 |
| NON_SYNONYMOUS_CODING | 11004 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 233 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 267 |
| SPLICE_SITE_REGION | 7 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 251 |
| START_GAINED | 24 |
| START_LOST | 11 |
| STOP_GAINED | 95 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 16 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 11705 |
| SYNONYMOUS_STOP | 8 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 112 |
| basic_snp_filter | 842 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 44 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 14 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 413 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 306 |
| PASS | 26931 |
| Quality | Value |
|---|---|
| Min | 30.6 |
| Average | 2156.10148140445 |
| Max | 87869.6 |
| Read Depth | Value |
|---|---|
| Min | 2 |
| Average | 145.99794152536458 |
| Max | 3636 |
| Type | Total Variants |
|---|---|
| None | 0 |