Name: f06400419-ib-ex-34-1651-narges-nikzad-x-7d5-orion-ilya-1_s17 soft_filtered-1
Variants: 28751
Novel Variants: 435 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 28751 18883 0/1 9756 1/1 112 1/2
Total Gene-associated SNVs 28751 18883 0/1 9756 1/1 112 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION153
CODON_CHANGE_PLUS_CODON_INSERTION98
CODON_DELETION62
CODON_INSERTION82
FRAME_SHIFT254
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST3
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0139.1:CTCF]3
MOTIF[MA0162.1:Egr1]1
NON_SYNONYMOUS_CODING11018
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION225
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS262
SPLICE_SITE_REGION7
SPLICE_SITE_REGION+SYNONYMOUS_CODING241
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED27
START_LOST19
STOP_GAINED87
STOP_GAINED+CODON_INSERTION1
STOP_LOST19
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11684
SYNONYMOUS_STOP12
None0

Type Total Variants
1008
MISSENSE11284
NONSENSE87
SILENT11938
None0

Type Total Variants
HIGH698
LOW11979
MODERATE11638
MODIFIER2
None0

Type Total Variants
basic_indel_filter182
basic_snp_filter1149
CNN_1D_INDEL_Tranche_99.40_100.0016
CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter6
CNN_1D_SNP_Tranche_99.95_100.00259
CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter237
PASS26902

Quality Value
Min30.6
Average2931.18651107809
Max46031.6

Read Depth Value
Min0
Average180.26072136621335
Max2144

Type Total Variants
None0

Chromossome Total Variants
12805
101114
112210
121399
13493
14904
15954
161207
171720
18439
192278
21790
20687
21346
22644
31617
41107
51201
61849
71510
8863
91029
X581
Y4