Name: f06400419-ib-ex-34-1651-narges-nikzad-x-7d5-orion-ilya-1_s17 soft_filtered-1
Variants: 28751
Novel Variants: 435 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 153 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 98 |
| CODON_DELETION | 62 |
| CODON_INSERTION | 82 |
| FRAME_SHIFT | 254 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 39 |
| FRAME_SHIFT+START_LOST | 5 |
| FRAME_SHIFT+STOP_GAINED | 4 |
| FRAME_SHIFT+STOP_LOST | 3 |
| MOTIF[MA0003.1:Ap2alpha] | 2 |
| MOTIF[MA0062.2:Gabp] | 1 |
| MOTIF[MA0095.1:Yy1] | 1 |
| MOTIF[MA0139.1:CTCF] | 3 |
| MOTIF[MA0162.1:Egr1] | 1 |
| NON_SYNONYMOUS_CODING | 11018 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 225 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 262 |
| SPLICE_SITE_REGION | 7 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 241 |
| SPLICE_SITE_REGION+SYNONYMOUS_STOP | 1 |
| START_GAINED | 27 |
| START_LOST | 19 |
| STOP_GAINED | 87 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_LOST | 19 |
| STOP_LOST+SPLICE_SITE_REGION | 2 |
| SYNONYMOUS_CODING | 11684 |
| SYNONYMOUS_STOP | 12 |
| None | 0 |
| Type | Total Variants |
|---|---|
| basic_indel_filter | 182 |
| basic_snp_filter | 1149 |
| CNN_1D_INDEL_Tranche_99.40_100.00 | 16 |
| CNN_1D_INDEL_Tranche_99.40_100.00;basic_indel_filter | 6 |
| CNN_1D_SNP_Tranche_99.95_100.00 | 259 |
| CNN_1D_SNP_Tranche_99.95_100.00;basic_snp_filter | 237 |
| PASS | 26902 |
| Quality | Value |
|---|---|
| Min | 30.6 |
| Average | 2931.18651107809 |
| Max | 46031.6 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 180.26072136621335 |
| Max | 2144 |
| Type | Total Variants |
|---|---|
| None | 0 |