Name: tsvc_variants_ionxpress_028
Variants: 30592
Novel Variants: 668 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 39 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 29 |
| CODON_DELETION | 27 |
| CODON_INSERTION | 21 |
| FRAME_SHIFT | 83 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 22 |
| FRAME_SHIFT+START_LOST | 2 |
| FRAME_SHIFT+STOP_LOST | 2 |
| GENE_FUSION | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 5 |
| MOTIF[MA0016.1:RXRA] | 1 |
| MOTIF[MA0024.1:E2F1] | 1 |
| MOTIF[MA0058.1:Max] | 5 |
| MOTIF[MA0062.1:Gabp] | 1 |
| MOTIF[MA0062.2:Gabp] | 9 |
| MOTIF[MA0079.1:SP1] | 2 |
| MOTIF[MA0079.2:SP1] | 2 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0093.1:USF1] | 1 |
| MOTIF[MA0095.1:Yy1] | 3 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 19 |
| MOTIF[MA0147.1:Cmyc] | 1 |
| MOTIF[MA0162.1:Egr1] | 4 |
| NON_SYNONYMOUS_CODING | 6012 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 107 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 164 |
| SPLICE_SITE_REGION | 9 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 129 |
| START_GAINED | 75 |
| START_LOST | 5 |
| STOP_GAINED | 45 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 15 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 6854 |
| SYNONYMOUS_STOP | 4 |
| TRANSCRIPT | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 30592 |
| Quality | Value |
|---|---|
| Min | 10.0 |
| Average | 327.629343756539 |
| Max | 2979.09 |
| Read Depth | Value |
|---|---|
| Min | 29 |
| Average | 101.6798836297071 |
| Max | 746 |
| Type | Total Variants |
|---|---|
| None | 0 |