Name: tsvc_variants_ionxpress_029
Variants: 32973
Novel Variants: 768 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 58 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 27 |
| CODON_DELETION | 25 |
| CODON_INSERTION | 27 |
| FRAME_SHIFT | 93 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 25 |
| FRAME_SHIFT+START_LOST | 3 |
| FRAME_SHIFT+STOP_GAINED | 1 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 1 |
| FRAME_SHIFT+STOP_LOST | 2 |
| GENE_FUSION | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 8 |
| MOTIF[MA0016.1:RXRA] | 1 |
| MOTIF[MA0058.1:Max] | 5 |
| MOTIF[MA0062.1:Gabp] | 3 |
| MOTIF[MA0062.2:Gabp] | 7 |
| MOTIF[MA0079.1:SP1] | 2 |
| MOTIF[MA0079.2:SP1] | 1 |
| MOTIF[MA0080.2:PU1] | 1 |
| MOTIF[MA0093.1:USF1] | 1 |
| MOTIF[MA0095.1:Yy1] | 4 |
| MOTIF[MA0099.1:Cfos] | 2 |
| MOTIF[MA0114.1:HNF4A] | 1 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 20 |
| MOTIF[MA0147.1:Cmyc] | 1 |
| MOTIF[MA0154.1:EBF] | 1 |
| MOTIF[MA0162.1:Egr1] | 4 |
| NON_SYNONYMOUS_CODING | 6293 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 136 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 172 |
| SPLICE_SITE_REGION | 11 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 147 |
| START_GAINED | 78 |
| START_LOST | 6 |
| STOP_GAINED | 41 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 17 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 7336 |
| SYNONYMOUS_STOP | 7 |
| TRANSCRIPT | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 32973 |
| Quality | Value |
|---|---|
| Min | 10.0 |
| Average | 358.349795863282 |
| Max | 2978.32 |
| Read Depth | Value |
|---|---|
| Min | 28 |
| Average | 109.85121159736754 |
| Max | 761 |
| Type | Total Variants |
|---|---|
| None | 0 |