Name: tsvc_variants_ionxpress_032
Variants: 29675
Novel Variants: 706 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 48 |
CODON_CHANGE_PLUS_CODON_INSERTION | 31 |
CODON_DELETION | 23 |
CODON_INSERTION | 22 |
FRAME_SHIFT | 92 |
FRAME_SHIFT+SPLICE_SITE_REGION | 22 |
FRAME_SHIFT+START_LOST | 3 |
FRAME_SHIFT+STOP_LOST | 2 |
MOTIF[MA0003.1:Ap2alpha] | 9 |
MOTIF[MA0058.1:Max] | 5 |
MOTIF[MA0062.1:Gabp] | 2 |
MOTIF[MA0062.2:Gabp] | 3 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 1 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0093.1:USF1] | 2 |
MOTIF[MA0095.1:Yy1] | 3 |
MOTIF[MA0114.1:HNF4A] | 2 |
MOTIF[MA0138.2:Nrsf] | 1 |
MOTIF[MA0139.1:CTCF] | 20 |
MOTIF[MA0147.1:Cmyc] | 1 |
MOTIF[MA0154.1:EBF] | 1 |
MOTIF[MA0162.1:Egr1] | 6 |
NON_SYNONYMOUS_CODING | 5689 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 119 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 165 |
SPLICE_SITE_REGION | 9 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 133 |
START_GAINED | 84 |
START_LOST | 4 |
STOP_GAINED | 35 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
STOP_GAINED+CODON_INSERTION | 2 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 14 |
STOP_LOST+SPLICE_SITE_REGION | 1 |
SYNONYMOUS_CODING | 6577 |
SYNONYMOUS_STOP | 3 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
PASS | 29675 |
Quality | Value |
---|---|
Min | 10.0 |
Average | 370.717219518112 |
Max | 2982.14 |
Read Depth | Value |
---|---|
Min | 22 |
Average | 109.7013647851727 |
Max | 1460 |
Type | Total Variants |
---|---|
None | 0 |