Name: tsvc_variants_ionxpress_032
Variants: 29675
Novel Variants: 706 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 48 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 31 |
| CODON_DELETION | 23 |
| CODON_INSERTION | 22 |
| FRAME_SHIFT | 92 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 22 |
| FRAME_SHIFT+START_LOST | 3 |
| FRAME_SHIFT+STOP_LOST | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 9 |
| MOTIF[MA0058.1:Max] | 5 |
| MOTIF[MA0062.1:Gabp] | 2 |
| MOTIF[MA0062.2:Gabp] | 3 |
| MOTIF[MA0079.1:SP1] | 1 |
| MOTIF[MA0079.2:SP1] | 1 |
| MOTIF[MA0080.1:PU1] | 1 |
| MOTIF[MA0093.1:USF1] | 2 |
| MOTIF[MA0095.1:Yy1] | 3 |
| MOTIF[MA0114.1:HNF4A] | 2 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 20 |
| MOTIF[MA0147.1:Cmyc] | 1 |
| MOTIF[MA0154.1:EBF] | 1 |
| MOTIF[MA0162.1:Egr1] | 6 |
| NON_SYNONYMOUS_CODING | 5689 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 119 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 165 |
| SPLICE_SITE_REGION | 9 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 133 |
| START_GAINED | 84 |
| START_LOST | 4 |
| STOP_GAINED | 35 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| STOP_GAINED+CODON_INSERTION | 2 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 14 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 6577 |
| SYNONYMOUS_STOP | 3 |
| TRANSCRIPT | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 29675 |
| Quality | Value |
|---|---|
| Min | 10.0 |
| Average | 370.717219518114 |
| Max | 2982.14 |
| Read Depth | Value |
|---|---|
| Min | 22 |
| Average | 109.7013647851727 |
| Max | 1460 |
| Type | Total Variants |
|---|---|
| None | 0 |