Name: pa_4_filt_10x
Variants: 103026
Novel Variants: 950 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 103026 63654 0/1 39051 1/1 321 1/2
Total Gene-associated SNVs 103026 63654 0/1 39051 1/1 321 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION90
CODON_CHANGE_PLUS_CODON_INSERTION53
CODON_DELETION36
CODON_INSERTION47
FRAME_SHIFT124
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]10
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]19
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]12
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]67
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]19
NON_SYNONYMOUS_CODING9898
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION223
PROTEIN_PROTEIN_INTERACTION_LOCUS6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS239
SPLICE_SITE_REGION33
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING225
START_GAINED228
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED81
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10933
SYNONYMOUS_STOP10
TRANSCRIPT1
None0

Type Total Variants
1109
MISSENSE10156
NONSENSE83
SILENT11168
None0

Type Total Variants
HIGH535
LOW11522
MODERATE10349
MODIFIER110
None0

Type Total Variants
PASS103026

Quality Value
Min30.77
Average1039.65679799244
Max27467.73

Read Depth Value
Min8
Average52.37752606138256
Max250

Type Total Variants
None0

Chromossome Total Variants
19911
104510
116336
125502
131993
143637
153579
164499
175691
181728
196598
27541
202688
211645
222415
35527
43960
54498
66347
75164
83734
94086
X1311
Y126