Name: pa_3_filt_10x
Variants: 103714
Novel Variants: 1026 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 103714 62809 0/1 40573 1/1 332 1/2
Total Gene-associated SNVs 103714 62809 0/1 40573 1/1 332 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION97
CODON_CHANGE_PLUS_CODON_INSERTION49
CODON_DELETION30
CODON_INSERTION54
FRAME_SHIFT134
FRAME_SHIFT+SPLICE_SITE_REGION36
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]9
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]10
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]12
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]61
MOTIF[MA0147.1:Cmyc]6
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]19
NON_SYNONYMOUS_CODING9783
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION206
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS247
SPLICE_SITE_REGION25
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING235
START_GAINED213
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED79
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10726
SYNONYMOUS_STOP14
None0

Type Total Variants
1076
MISSENSE10033
NONSENSE81
SILENT10975
None0

Type Total Variants
HIGH555
LOW11296
MODERATE10221
MODIFIER93
None0

Type Total Variants
PASS103714

Quality Value
Min30.77
Average947.708380257147
Max30625.73

Read Depth Value
Min7
Average45.76790018705286
Max250

Type Total Variants
None0

Chromossome Total Variants
19714
104452
116108
125692
132019
143755
153649
164607
175520
181825
196712
27476
202575
211500
222266
35922
44386
54618
66545
75287
83643
94057
X1247
Y139