Name: pa_2_filt_10x
Variants: 106738
Novel Variants: 1065 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 106738 64813 0/1 41570 1/1 355 1/2
Total Gene-associated SNVs 106738 64813 0/1 41570 1/1 355 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION99
CODON_CHANGE_PLUS_CODON_INSERTION56
CODON_DELETION32
CODON_INSERTION55
FRAME_SHIFT134
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
MOTIF[MA0003.1:Ap2alpha]15
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]14
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]19
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]9
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]67
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]16
NON_SYNONYMOUS_CODING10040
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION214
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS242
SPLICE_SITE_REGION31
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING237
START_GAINED215
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED90
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11020
SYNONYMOUS_STOP11
None0

Type Total Variants
1109
MISSENSE10295
NONSENSE93
SILENT11268
None0

Type Total Variants
HIGH562
LOW11600
MODERATE10498
MODIFIER105
None0

Type Total Variants
PASS106738

Quality Value
Min30.77
Average1104.44429059912
Max29170.73

Read Depth Value
Min7
Average54.52503325900804
Max250

Type Total Variants
None0

Chromossome Total Variants
110123
104611
116478
125764
132254
143872
153585
164726
175872
181823
196787
27626
202837
211604
222490
35780
44428
54606
66687
75405
83709
94260
X1287
Y124