Name: pa_1_filt_10x
Variants: 106767
Novel Variants: 1095 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 106767 66575 0/1 39870 1/1 322 1/2
Total Gene-associated SNVs 106767 66575 0/1 39870 1/1 322 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION90
CODON_CHANGE_PLUS_CODON_INSERTION67
CODON_DELETION37
CODON_INSERTION54
FRAME_SHIFT134
FRAME_SHIFT+SPLICE_SITE_REGION36
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]13
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]14
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]18
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]6
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]3
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]71
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]25
NON_SYNONYMOUS_CODING10151
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION215
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS225
SPLICE_SITE_REGION29
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING254
START_GAINED224
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED85
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING11055
SYNONYMOUS_STOP10
None0

Type Total Variants
1115
MISSENSE10410
NONSENSE86
SILENT11319
None0

Type Total Variants
HIGH536
LOW11656
MODERATE10616
MODIFIER122
None0

Type Total Variants
PASS106767

Quality Value
Min30.77
Average998.546050652063
Max27572.73

Read Depth Value
Min8
Average49.45319246583682
Max250

Type Total Variants
None0

Chromossome Total Variants
110093
104767
116218
125693
132072
143798
153571
164924
175686
181789
196998
27875
202644
211651
222572
35859
44319
54545
66049
75366
83813
94304
X2050
Y111