Mendel,MD | Dashboard

Name: pa_1_filt_10x
Variants: 106767
Novel Variants: 1095 (Not in latest DbSNP Build)

Type	Total Variants
Total SNVs	106767	66575 0/1	39870 1/1	322 1/2
Total Gene-associated SNVs	106767	66575 0/1	39870 1/1	322 1/2

Type	Total Variants
CODON_CHANGE_PLUS_CODON_DELETION	90
CODON_CHANGE_PLUS_CODON_INSERTION	67
CODON_DELETION	37
CODON_INSERTION	54
FRAME_SHIFT	134
FRAME_SHIFT+SPLICE_SITE_REGION	36
FRAME_SHIFT+START_LOST	2
FRAME_SHIFT+STOP_GAINED	2
FRAME_SHIFT+STOP_LOST	2
GENE_FUSION	1
MOTIF[MA0003.1:Ap2alpha]	13
MOTIF[MA0014.1:Pax5]	3
MOTIF[MA0016.1:RXRA]	3
MOTIF[MA0024.1:E2F1]	4
MOTIF[MA0035.2:Gata1]	1
MOTIF[MA0036.1:Gata2]	1
MOTIF[MA0047.1:FOXA2]	1
MOTIF[MA0058.1:Max]	14
MOTIF[MA0059.1:Cmyc]	3
MOTIF[MA0062.1:Gabp]	4
MOTIF[MA0062.2:Gabp]	18
MOTIF[MA0065.2:PPARG]	1
MOTIF[MA0079.1:SP1]	2
MOTIF[MA0079.2:SP1]	6
MOTIF[MA0080.1:PU1]	3
MOTIF[MA0080.2:PU1]	3
MOTIF[MA0095.1:Yy1]	5
MOTIF[MA0099.1:Cfos]	2
MOTIF[MA0099.2:AP1]	2
MOTIF[MA0114.1:HNF4A]	5
MOTIF[MA0138.2:Nrsf]	4
MOTIF[MA0139.1:CTCF]	71
MOTIF[MA0140.1:Tal1]	1
MOTIF[MA0147.1:Cmyc]	7
MOTIF[MA0148.1:FOXA1]	1
MOTIF[MA0154.1:EBF]	2
MOTIF[MA0162.1:Egr1]	25
NON_SYNONYMOUS_CODING	10151
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION	215
NON_SYNONYMOUS_START	1
PROTEIN_PROTEIN_INTERACTION_LOCUS	3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS	225
SPLICE_SITE_REGION	29
SPLICE_SITE_REGION+CODON_DELETION	1
SPLICE_SITE_REGION+CODON_INSERTION	1
SPLICE_SITE_REGION+SYNONYMOUS_CODING	254
START_GAINED	224
START_LOST	14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION	1
STOP_GAINED	85
STOP_GAINED+CODON_INSERTION	1
STOP_GAINED+SPLICE_SITE_REGION	1
STOP_LOST	24
STOP_LOST+SPLICE_SITE_REGION	5
SYNONYMOUS_CODING	11055
SYNONYMOUS_STOP	10
None	0

Type	Total Variants
PASS	106767

Type	Total Variants
None	0