Name: pa_1_filt_10x
Variants: 106767
Novel Variants: 1095 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 90 |
CODON_CHANGE_PLUS_CODON_INSERTION | 67 |
CODON_DELETION | 37 |
CODON_INSERTION | 54 |
FRAME_SHIFT | 134 |
FRAME_SHIFT+SPLICE_SITE_REGION | 36 |
FRAME_SHIFT+START_LOST | 2 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_LOST | 2 |
GENE_FUSION | 1 |
MOTIF[MA0003.1:Ap2alpha] | 13 |
MOTIF[MA0014.1:Pax5] | 3 |
MOTIF[MA0016.1:RXRA] | 3 |
MOTIF[MA0024.1:E2F1] | 4 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0047.1:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 14 |
MOTIF[MA0059.1:Cmyc] | 3 |
MOTIF[MA0062.1:Gabp] | 4 |
MOTIF[MA0062.2:Gabp] | 18 |
MOTIF[MA0065.2:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 2 |
MOTIF[MA0079.2:SP1] | 6 |
MOTIF[MA0080.1:PU1] | 3 |
MOTIF[MA0080.2:PU1] | 3 |
MOTIF[MA0095.1:Yy1] | 5 |
MOTIF[MA0099.1:Cfos] | 2 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0114.1:HNF4A] | 5 |
MOTIF[MA0138.2:Nrsf] | 4 |
MOTIF[MA0139.1:CTCF] | 71 |
MOTIF[MA0140.1:Tal1] | 1 |
MOTIF[MA0147.1:Cmyc] | 7 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 2 |
MOTIF[MA0162.1:Egr1] | 25 |
NON_SYNONYMOUS_CODING | 10151 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 215 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 225 |
SPLICE_SITE_REGION | 29 |
SPLICE_SITE_REGION+CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 254 |
START_GAINED | 224 |
START_LOST | 14 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 85 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 24 |
STOP_LOST+SPLICE_SITE_REGION | 5 |
SYNONYMOUS_CODING | 11055 |
SYNONYMOUS_STOP | 10 |
None | 0 |
Type | Total Variants |
---|---|
PASS | 106767 |
Quality | Value |
---|---|
Min | 30.77 |
Average | 998.546050652063 |
Max | 27572.73 |
Read Depth | Value |
---|---|
Min | 8 |
Average | 49.45319246583682 |
Max | 250 |
Type | Total Variants |
---|---|
None | 0 |